diff --git a/docs/src/pluto_notebooks/rnaset1_tmao.jl b/docs/src/pluto_notebooks/rnaset1_tmao.jl
index 4d33ccd..463c231 100644
--- a/docs/src/pluto_notebooks/rnaset1_tmao.jl
+++ b/docs/src/pluto_notebooks/rnaset1_tmao.jl
@@ -268,9 +268,9 @@ Unitful = "~1.21.0"
 PLUTO_MANIFEST_TOML_CONTENTS = """
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.11.0-rc3"
+julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "b6895ed08ccd1f7ddf3e59ca14b1094a339f0363"
+project_hash = "89eb9cfc874aad1e4304ba045f70c6bb38d1f84f"
 
 [[deps.AbstractPlutoDingetjes]]
 deps = ["Pkg"]
@@ -296,7 +296,7 @@ version = "1.1.3"
 
 [[deps.ArgTools]]
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
-version = "1.1.2"
+version = "1.1.1"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra"]
@@ -330,7 +330,6 @@ version = "7.16.0"
 
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
-version = "1.11.0"
 
 [[deps.AtomsBase]]
 deps = ["LinearAlgebra", "PeriodicTable", "Printf", "Requires", "StaticArrays", "Unitful", "UnitfulAtomic"]
@@ -340,7 +339,6 @@ version = "0.4.2"
 
 [[deps.Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
-version = "1.11.0"
 
 [[deps.BitFlags]]
 git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d"
@@ -494,7 +492,6 @@ version = "1.0.0"
 [[deps.Dates]]
 deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
-version = "1.11.0"
 
 [[deps.Dbus_jll]]
 deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"]
@@ -523,7 +520,6 @@ version = "1.15.1"
 [[deps.Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
-version = "1.11.0"
 
 [[deps.Distributions]]
 deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
@@ -596,7 +592,6 @@ version = "4.4.4+1"
 
 [[deps.FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
-version = "1.11.0"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra"]
@@ -668,7 +663,6 @@ version = "1.0.14+0"
 [[deps.Future]]
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
-version = "1.11.0"
 
 [[deps.GLFW_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"]
@@ -763,7 +757,6 @@ version = "1.4.2"
 [[deps.InteractiveUtils]]
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
-version = "1.11.0"
 
 [[deps.InvertedIndices]]
 git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038"
@@ -857,17 +850,16 @@ version = "0.6.4"
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "8.6.0+0"
+version = "8.4.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
-version = "1.11.0"
 
 [[deps.LibGit2_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"]
 uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
-version = "1.7.2+0"
+version = "1.6.4+0"
 
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
@@ -876,7 +868,6 @@ version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
-version = "1.11.0"
 
 [[deps.Libffi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -929,7 +920,6 @@ version = "2.40.1+0"
 [[deps.LinearAlgebra]]
 deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-version = "1.11.0"
 
 [[deps.LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
@@ -949,7 +939,6 @@ version = "0.3.28"
 
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
-version = "1.11.0"
 
 [[deps.LoggingExtras]]
 deps = ["Dates", "Logging"]
@@ -977,7 +966,6 @@ version = "0.5.13"
 [[deps.Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
-version = "1.11.0"
 
 [[deps.MbedTLS]]
 deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"]
@@ -988,7 +976,7 @@ version = "1.1.9"
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
-version = "2.28.6+0"
+version = "2.28.2+1"
 
 [[deps.Measures]]
 git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102"
@@ -1003,7 +991,6 @@ version = "1.2.0"
 
 [[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
-version = "1.11.0"
 
 [[deps.MolSimToolkit]]
 deps = ["AtomsBase", "CellListMap", "Chemfiles", "DocStringExtensions", "EasyFit", "LaTeXStrings", "LinearAlgebra", "OffsetArrays", "PDBTools", "ProgressMeter", "ProteinSecondaryStructures", "Reexport", "StaticArrays", "Statistics", "StatsBase", "TestItems"]
@@ -1017,7 +1004,7 @@ weakdeps = ["Plots"]
 
 [[deps.MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
-version = "2023.12.12"
+version = "2023.1.10"
 
 [[deps.NLSolversBase]]
 deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
@@ -1053,7 +1040,7 @@ version = "1.3.5+1"
 [[deps.OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
-version = "0.3.27+1"
+version = "0.3.23+4"
 
 [[deps.OpenLibm_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -1142,13 +1129,9 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc"
 version = "0.43.4+0"
 
 [[deps.Pkg]]
-deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"]
+deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
-version = "1.11.0"
-weakdeps = ["REPL"]
-
-    [deps.Pkg.extensions]
-    REPLExt = "REPL"
+version = "1.10.0"
 
 [[deps.PlotThemes]]
 deps = ["PlotUtils", "Statistics"]
@@ -1215,7 +1198,6 @@ version = "2.4.0"
 [[deps.Printf]]
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
-version = "1.11.0"
 
 [[deps.ProgressMeter]]
 deps = ["Distributed", "Printf"]
@@ -1271,14 +1253,12 @@ version = "2.11.1"
     Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
 
 [[deps.REPL]]
-deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"]
+deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
-version = "1.11.0"
 
 [[deps.Random]]
 deps = ["SHA"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
-version = "1.11.0"
 
 [[deps.RecipesBase]]
 deps = ["PrecompileTools"]
@@ -1345,7 +1325,6 @@ version = "1.4.5"
 
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
-version = "1.11.0"
 
 [[deps.Setfield]]
 deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"]
@@ -1366,7 +1345,6 @@ version = "1.2.0"
 
 [[deps.Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
-version = "1.11.0"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
@@ -1377,7 +1355,7 @@ version = "1.2.1"
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
-version = "1.11.0"
+version = "1.10.0"
 
 [[deps.SpecialFunctions]]
 deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"]
@@ -1411,14 +1389,9 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
 version = "1.4.3"
 
 [[deps.Statistics]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0"
+deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
-version = "1.11.1"
-weakdeps = ["SparseArrays"]
-
-    [deps.Statistics.extensions]
-    SparseArraysExt = ["SparseArrays"]
+version = "1.10.0"
 
 [[deps.StatsAPI]]
 deps = ["LinearAlgebra"]
@@ -1452,10 +1425,6 @@ git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3"
 uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
 version = "0.4.0"
 
-[[deps.StyledStrings]]
-uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b"
-version = "1.11.0"
-
 [[deps.SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
@@ -1463,7 +1432,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
 [[deps.SuiteSparse_jll]]
 deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
 uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
-version = "7.7.0+0"
+version = "7.2.1+1"
 
 [[deps.TOML]]
 deps = ["Dates"]
@@ -1496,7 +1465,6 @@ version = "0.1.1"
 [[deps.Test]]
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-version = "1.11.0"
 
 [[deps.TestItems]]
 git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb"
@@ -1526,7 +1494,6 @@ version = "1.5.1"
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
 uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
-version = "1.11.0"
 
 [[deps.UnPack]]
 git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b"
@@ -1535,7 +1502,6 @@ version = "1.0.2"
 
 [[deps.Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
-version = "1.11.0"
 
 [[deps.UnicodeFun]]
 deps = ["REPL"]
@@ -1845,7 +1811,7 @@ version = "1.1.6+0"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.59.0+0"
+version = "1.52.0+1"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]