From 26b220246ccf9ade54af49cfad7e22fe6df01ca9 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Thu, 29 Aug 2024 01:26:16 +0800 Subject: [PATCH 01/28] R-BiocManager: update to 1.30.25 --- R/R-BiocManager/Portfile | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/R/R-BiocManager/Portfile b/R/R-BiocManager/Portfile index 5e2969fc59beb..7c66368e3890b 100644 --- a/R/R-BiocManager/Portfile +++ b/R/R-BiocManager/Portfile @@ -3,7 +3,7 @@ PortSystem 1.0 PortGroup R 1.0 -R.setup cran Bioconductor BiocManager 1.30.24 +R.setup cran Bioconductor BiocManager 1.30.25 revision 0 categories-append bioconductor platforms {darwin any} @@ -12,9 +12,9 @@ license Artistic-2 description Access the Bioconductor project package repository long_description {*}${description} homepage https://bioconductor.github.io/BiocManager -checksums rmd160 811959ffe888e129e26cc6d369c8107836feee27 \ - sha256 645c423bb144dbd476cb308678bd36e06c1a3494115f157166dd3f59955ec7d1 \ - size 593392 +checksums rmd160 56554b385cbdb3d13a6f4cbcad1cbcfd17d32b3b \ + sha256 83ef8b57dcc7350fe1e8c62590a60d3ad3e1f9c8660930c946b20340a4a81e15 \ + size 593414 supported_archs noarch depends_test-append port:R-BiocVersion \ From f47e4fff653c7d7daa6865e4a5e5311d5213d6d8 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Thu, 29 Aug 2024 01:25:43 +0800 Subject: [PATCH 02/28] R-boot: update to 1.3-31 --- R/R-boot/Portfile | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/R/R-boot/Portfile b/R/R-boot/Portfile index 63bad7e5542e7..5807d973216a1 100644 --- a/R/R-boot/Portfile +++ b/R/R-boot/Portfile @@ -6,17 +6,17 @@ PortGroup R 1.0 R.recommended yes # This is a recommended package. 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16:12:53 +0800 Subject: [PATCH 17/28] R-SSN2: update to 0.2.1 --- R/R-SSN2/Portfile | 17 +++++------------ 1 file changed, 5 insertions(+), 12 deletions(-) diff --git a/R/R-SSN2/Portfile b/R/R-SSN2/Portfile index 5555e18ddb49a..24a51eccd2512 100644 --- a/R/R-SSN2/Portfile +++ b/R/R-SSN2/Portfile @@ -3,24 +3,17 @@ PortSystem 1.0 PortGroup R 1.0 -R.setup github USEPA SSN2 0.2.0 v +# Just use CRAN tarball here. +R.setup cran USEPA SSN2 0.2.1 revision 0 maintainers {@barracuda156 gmail.com:vital.had} openmaintainer license GPL-3 description Spatial modelling on stream networks long_description {*}${description} homepage https://usepa.github.io/SSN2 -checksums rmd160 bf46772a6eb703278b9759c71c0c8f2b658a5e56 \ - sha256 900ef27f5378d7f2647315ad5c47e758fb2293518e5ade0b310256c1a45bfa70 \ - size 4074965 -github.tarball_from archive - -post-extract { - # Trash pre-built Intel binaries, which break powerpc and aarch64 builds: - foreach obj [glob ${worksrcpath}/src/*.o] { - delete ${obj} - } -} 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vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran corneliusfritz2010 bigergm 1.2.1 +revision 0 +categories-append math +maintainers {@barracuda156 gmail.com:vital.had} openmaintainer +license GPL-3 +description Hierarchical exponential-family models for big networks +long_description A toolbox for analyzing and simulating large networks based \ + on hierarchical exponential-family random graph models (HERGMs). +checksums rmd160 d0ca43c2937fd081af48661f34c88ab31b57e92a \ + sha256 688250b7a20a8ec12bf01fc3ce636368772ab70788c97f4250f3b628a33a1e75 \ + size 1754339 + +depends_lib-append port:R-cachem \ + port:R-dplyr \ + port:R-ergm \ + port:R-ergm.multi \ + port:R-foreach \ + port:R-glue \ + port:R-igraph \ + port:R-intergraph \ + port:R-magrittr \ + port:R-memoise \ + port:R-network \ + port:R-purrr \ + port:R-Rcpp \ + port:R-RcppArmadillo \ + port:R-readr \ + port:R-reticulate \ + port:R-rlang \ + port:R-statnet.common \ + port:R-stringr \ + port:R-tidyr + +compilers.setup require_fortran + +depends_test-append port:R-knitr \ + port:R-rmarkdown \ + port:R-sna \ + port:R-testthat \ + port:R-tibble + +test.run yes From 89ad0c952963c7f54d3c488264f8b9ba76ee06ac Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Wed, 28 Aug 2024 18:06:11 +0800 Subject: [PATCH 20/28] R-garchx: new port --- R/R-garchx/Portfile | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 R/R-garchx/Portfile diff --git a/R/R-garchx/Portfile b/R/R-garchx/Portfile new file mode 100644 index 0000000000000..8cdbd119bd69a --- /dev/null +++ b/R/R-garchx/Portfile @@ -0,0 +1,23 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran gsucarrat garchx 1.5 +revision 0 +categories-append finance +maintainers nomaintainer +license GPL-2+ +description Flexible and robust GARCH-X modelling +long_description {*}${description} +homepage https://github.com/gsucarrat/garchx +checksums rmd160 71ffa89167558b68a850d0240455774b4252933c \ + sha256 ab98f3b0a8ee302dece8d3b23eae99558e39f8c84080eb4d76dbb4a5732bcb7e \ + size 20582 + +depends_lib-append port:R-zoo + +depends_test-append port:R-lgarch \ + port:R-tvgarch + +test.run yes From 52d54221e878aab7e56b1036e89bf456fbcb076e Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Wed, 28 Aug 2024 18:06:40 +0800 Subject: [PATCH 21/28] R-nnlasso: new port --- R/R-nnlasso/Portfile | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 R/R-nnlasso/Portfile diff --git a/R/R-nnlasso/Portfile b/R/R-nnlasso/Portfile new file mode 100644 index 0000000000000..204cfe50b6c3e --- /dev/null +++ b/R/R-nnlasso/Portfile @@ -0,0 +1,19 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran mandal.stat nnlasso 0.3 +revision 0 +platforms {darwin any} +maintainers nomaintainer +license GPL-2+ +description Non-negative lasso and elastic net penalized \ + generalized linear models +long_description {*}${description} +checksums rmd160 cb914adc8f61b1c0daa1e41bcfa641992ce84143 \ + sha256 646250cba6189cdc83fcea7f7b9b07a4f7ba79593d75c77dfac1e0576956f3d8 \ + size 18173 +supported_archs noarch + +test.run yes From 5121697f04a9c9988007ab914bbffc6e250a4b72 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Wed, 28 Aug 2024 20:09:31 +0800 Subject: [PATCH 22/28] R-pdR: new port --- R/R-pdR/Portfile | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 R/R-pdR/Portfile diff --git a/R/R-pdR/Portfile b/R/R-pdR/Portfile new file mode 100644 index 0000000000000..8ded395eb3fce --- /dev/null +++ b/R/R-pdR/Portfile @@ -0,0 +1,25 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran tsungwu pdR 1.9.3 +revision 0 +categories-append economics +platforms {darwin any} +maintainers {@barracuda156 gmail.com:vital.had} openmaintainer +license GPL-2+ +description Threshold model and unit root tests \ + in cross-section and time series data +long_description {*}${description} +checksums rmd160 46a37bad97e5f0fb94952e8749d4d64b7eecb77c \ + sha256 fa5054dcdf92ef35632a773e931ea12d870d720752ff19ada9c042aedbe5c7e5 \ + size 414814 +supported_archs noarch + +depends_lib-append port:R-glmmTMB \ + port:R-lme4 \ + port:R-pglm \ + port:R-plm + +test.run yes From be90e1a4c3907d39617feaf35843b93767270794 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Thu, 29 Aug 2024 01:14:04 +0800 Subject: [PATCH 23/28] R-pRF: new port --- R/R-pRF/Portfile | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 R/R-pRF/Portfile diff --git a/R/R-pRF/Portfile b/R/R-pRF/Portfile new file mode 100644 index 0000000000000..ca5d06047c7b6 --- /dev/null +++ b/R/R-pRF/Portfile @@ -0,0 +1,25 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran ankur.chakravarthy.10 pRF 1.2 +revision 0 +platforms {darwin any} +maintainers nomaintainer +license GPL-3 +description Permutation Significance for Random Forests +long_description {*}${description} +checksums rmd160 da1d5831101b43ef3d7bb9c83b603d7ece92f3b1 \ + sha256 1da07af0c367cfff767f8078bb2247534a98db7be915f65b36a1aa7ae652599f \ + size 4561 +supported_archs noarch + +depends_lib-append port:R-dplyr \ + port:R-ggplot2 \ + port:R-multtest \ + port:R-permute \ + port:R-randomForest \ + port:R-reshape2 + +test.run yes From dc41157159f8303529502660c54fb9c8f8487816 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Wed, 28 Aug 2024 18:07:38 +0800 Subject: [PATCH 24/28] R-RcppBessel: new port --- R/R-RcppBessel/Portfile | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 R/R-RcppBessel/Portfile diff --git a/R/R-RcppBessel/Portfile b/R/R-RcppBessel/Portfile new file mode 100644 index 0000000000000..86fcdf3ffd20f --- /dev/null +++ b/R/R-RcppBessel/Portfile @@ -0,0 +1,31 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran alexiosg RcppBessel 1.0.0 +revision 0 +categories-append math +maintainers {@barracuda156 gmail.com:vital.had} openmaintainer +license GPL-2+ +description Bessel Functions Rcpp Interface +long_description ${name} exports an Rcpp interface for the Bessel \ + functions in the Bessel package. +homepage https://github.com/alexiosg/RcppBessel +checksums rmd160 620623e105272b231b1dd369359964ba0e079cd0 \ + sha256 a987531b86c18f46f37cd3ecf33a02261b85110a8af7b60045d73a6503d0d4a5 \ + size 90820 + +depends_lib-append port:R-Rcpp \ + port:R-Rdpack + +compilers.setup require_fortran + +depends_test-append port:R-Bessel \ + port:R-knitr \ + port:R-microbenchmark \ + port:R-rmarkdown \ + port:R-roxygen2 \ + port:R-testthat + +test.run yes From d2babf62391a31d6d09660a3fba9e195bb4ccc7c Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Wed, 28 Aug 2024 18:08:15 +0800 Subject: [PATCH 25/28] R-starma: new port --- R/R-starma/Portfile | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 R/R-starma/Portfile diff --git a/R/R-starma/Portfile b/R/R-starma/Portfile new file mode 100644 index 0000000000000..a5c50ebef2d08 --- /dev/null +++ b/R/R-starma/Portfile @@ -0,0 +1,27 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup cran felix starma 1.3 +revision 0 +categories-append math +maintainers {@barracuda156 gmail.com:vital.had} openmaintainer +license GPL-2 +description Space–Time Auto-Regressive Moving Average processes +long_description Modelling Space–Time Auto-Regressive Moving Average \ + (STARMA) Processes. +checksums rmd160 37266198c0b229bf544eeb4ca83aba77a12e5414 \ + sha256 9db3aaf2ae3859cb3e64e915b258524976d621063c3397c616753db8949f201f \ + size 46963 + +depends_lib-append port:R-ggplot2 \ + port:R-Rcpp \ + port:R-RcppArmadillo \ + port:R-scales + +compilers.setup require_fortran + +depends_test-append port:R-spdep + +test.run yes From 589af9fca6175ea03de32330d9a1ce643c5a3ab6 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Wed, 28 Aug 2024 18:08:40 +0800 Subject: [PATCH 26/28] R-tvgarch: new port --- R/R-tvgarch/Portfile | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 R/R-tvgarch/Portfile diff --git a/R/R-tvgarch/Portfile b/R/R-tvgarch/Portfile new file mode 100644 index 0000000000000..027274bbd9692 --- /dev/null +++ b/R/R-tvgarch/Portfile @@ -0,0 +1,23 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; 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0000000000000..323bc331d6d31 --- /dev/null +++ b/R/R-vek/Portfile @@ -0,0 +1,22 @@ +# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 + +PortSystem 1.0 +PortGroup R 1.0 + +R.setup github samsemegne vek 1.0.0 v +revision 0 +platforms {darwin any} +maintainers nomaintainer +license GPL-3 +description Predicate helper functions for testing \ + simple atomic vectors +long_description {*}${description} +checksums rmd160 1d8297be2c1468e75ecf20ebb996e07b235988ca \ + sha256 6973d686d21c7becff3fbf48d00c65a1f6ea53184f0ef8dbf819a8478b1bdf2f \ + size 21508 +github.tarball_from archive +supported_archs noarch + +depends_test-append port:R-tinytest + +test.run yes From 526c7be0393b73c4e7e04ecb414062475fd5db01 Mon Sep 17 00:00:00 2001 From: Sergey Fedorov Date: Wed, 28 Aug 2024 20:11:55 +0800 Subject: [PATCH 28/28] R-glmmTMB: revbump to make dependents happy --- R/R-glmmTMB/Portfile | 3 ++- 1 file changed, 2 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