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\[ [arXiv](https://arxiv.org/abs/2406.16192) | [Data](https://huggingface.co/datasets/MahmoodLab/hest) | [Documentation](https://hest.readthedocs.io/en/latest/) | [Tutorials](https://github.com/mahmoodlab/HEST/tree/main/tutorials) | [Cite](https://github.com/mahmoodlab/hest?tab=readme-ov-file#citation) \]
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Welcome to the official GitHub repository of the HEST-Library introduced in *"HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis", NeurIPS Spotlight, 2024*. This project was developed by the [Mahmood Lab](https://faisal.ai/) at Harvard Medical School and Brigham and Women's Hospital.
-HEST-1k, HEST-Library, and HEST-Benchmark are released under the Attribution-NonCommercial-ShareAlike 4.0 International license.
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- **HEST-Library:** A series of helpers to assemble new ST samples (ST, Visium, Visium HD, Xenium) and work with HEST-1k (ST analysis, batch effect viz and correction, etc.)
- **HEST-Benchmark:** A new benchmark to assess the predictive performance of foundation models for histology in predicting gene expression from morphology
+HEST-1k, HEST-Library, and HEST-Benchmark are released under the Attribution-NonCommercial-ShareAlike 4.0 International license.
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## Updates