diff --git a/src/sssom/__init__.py b/src/sssom/__init__.py index 596bc802..08f4fafc 100644 --- a/src/sssom/__init__.py +++ b/src/sssom/__init__.py @@ -2,8 +2,6 @@ import importlib.metadata -import pandas as pd - try: __version__ = importlib.metadata.version(__name__) except importlib.metadata.PackageNotFoundError: @@ -26,10 +24,3 @@ ) from .constants import generate_mapping_set_id, get_default_metadata # noqa:401 - -# Context https://github.com/pandas-dev/pandas/issues/57734 -try: - pd.set_option("future.no_silent_downcasting", True) -except KeyError: - # Option does not exist in this version of pandas - pass diff --git a/src/sssom/cli.py b/src/sssom/cli.py index 9762d700..3bd8b72a 100644 --- a/src/sssom/cli.py +++ b/src/sssom/cli.py @@ -54,6 +54,7 @@ filter_redundant_rows, invert_mappings, merge_msdf, + pandas_set_no_silent_downcasting, reconcile_prefix_and_data, remove_unmatched, sort_df_rows_columns, @@ -126,6 +127,9 @@ def main(verbose: int, quiet: bool): """Run the SSSOM CLI.""" logger = _logging.getLogger() + + pandas_set_no_silent_downcasting() + if verbose >= 2: logger.setLevel(level=_logging.DEBUG) elif verbose == 1: diff --git a/src/sssom/util.py b/src/sssom/util.py index 30861868..dbe734a3 100644 --- a/src/sssom/util.py +++ b/src/sssom/util.py @@ -1497,3 +1497,12 @@ def _safe_infer_objects(df): return df.infer_objects(copy=False) else: return df.infer_objects() + + +def pandas_set_no_silent_downcasting(no_silent_downcasting=True): + """Set pandas future.no_silent_downcasting option. Context https://github.com/pandas-dev/pandas/issues/57734.""" + try: + pd.set_option("future.no_silent_downcasting", no_silent_downcasting) + except KeyError: + # Option does not exist in this version of pandas + pass diff --git a/tests/validate_data/basic.tsv.owl b/tests/validate_data/basic.tsv.owl index 61df1b10..977e16cb 100644 --- a/tests/validate_data/basic.tsv.owl +++ b/tests/validate_data/basic.tsv.owl @@ -224,186 +224,188 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:region ; + owl:annotatedTarget z:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_label "REGION" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_label "region" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_element ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource y:lung ; + owl:annotatedTarget x:lung ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "lung" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "lungs" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.818562e-01 ; + owl:annotatedSource x:lung ; + owl:annotatedTarget z:lung ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendage" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "lung" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:organ ; + owl:annotatedSource x:region ; + owl:annotatedTarget z:region ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; + sssom:object_label "REGION" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "region" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget z:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "TISSUE" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "tissue" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; - owl:annotatedTarget x:liver ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 5.34602e-01 ; sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "liver" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; + sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; - owl:annotatedTarget x:liver ; + owl:annotatedSource z:eye ; + owl:annotatedTarget y:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; + sssom:object_label "eyes" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "organ" ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "ORGAN" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:lung ; + owl:annotatedTarget y:lung ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "lung" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_label "lungs" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_label "lung" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 7.64651e-01 ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget x:tissue ; + sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone element" ; + sssom:match_string "tissue" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; + sssom:object_label "tissue" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field oboInOwl:hasRelatedSynonym ; - sssom:subject_source y:example . + sssom:subject_label "TISSUE" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; + owl:annotatedSource z:bone_tissue ; owl:annotatedTarget x:bone_element ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -411,196 +413,213 @@ x:bone_element a owl:Class ; sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 7.387961e-01 ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget y:foot ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:heart ; + owl:annotatedTarget y:heart ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "heart" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "feet" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "hearts" ; + sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_label "heart" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget z:lung ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "liver" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; - owl:annotatedTarget x:tissue ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:hand ; + owl:annotatedTarget y:hand ; + sssom:confidence 8.212624e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissue" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissue" ; + sssom:object_label "hands" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8.212624e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_label "hands" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget y:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "tissues" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "TISSUE" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 6.967305e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:lung ; + owl:annotatedTarget y:lung ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone el" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasRelatedSynonym ; + sssom:object_label "lungs" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "lung" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:region ; - owl:annotatedTarget z:region ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "bone" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "regions" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002481" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_element ; + owl:annotatedSource y:liver ; + owl:annotatedTarget z:liver ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "livers" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:liver ; - owl:annotatedTarget y:liver ; + owl:annotatedTarget z:organ ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; + sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "liver" ; sssom:subject_match_field oboInOwl:hasDbXref ; @@ -609,50 +628,49 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget y:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:appendage ; - owl:annotatedTarget y:appendage ; + owl:annotatedSource x:liver ; + owl:annotatedTarget y:liver ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "liver" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendages" ; + sssom:object_label "livers" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "APPENDAGE" ; + sssom:subject_label "liver" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eye ; - owl:annotatedTarget x:eye ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eye" ; + sssom:object_label "manus" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -662,157 +680,137 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendages" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; - owl:annotatedTarget z:organ ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget y:tissue ; sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; + sssom:object_label "tissues" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; + sssom:subject_label "tissue" ; sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_label "bones" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0002387" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "feet" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . + [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:eye ; owl:annotatedTarget x:eye ; - sssom:confidence 5.688741e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "ey" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "eye" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "eyes" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; - owl:annotatedTarget y:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organs" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:lung ; - owl:annotatedTarget x:lung ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:region ; + owl:annotatedTarget z:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget y:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendages" ; + sssom:object_label "REGION" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; - sssom:subject_match_field rdfs:label, - skos:prefLabel ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget y:lung ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_label "regions" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:organ ; - owl:annotatedTarget x:lung ; + owl:annotatedTarget x:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; + sssom:object_label "heart" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -825,164 +823,138 @@ x:bone_element a owl:Class ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:heart ; owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "heart" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "hearts" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:tissue ; - owl:annotatedTarget x:tissue ; + owl:annotatedSource y:lung ; + owl:annotatedTarget x:lung ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "lung" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissue" ; + sssom:object_label "lung" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissues" ; + sssom:subject_label "lungs" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2.612039e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:appendage ; + owl:annotatedTarget x:appendage ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "appendage" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "appendages" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:region ; - owl:annotatedTarget x:region ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "REGION" ; + sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . - -[] a owl:Ontology ; - dc1:creator orcid:1234, - orcid:5678 ; - dc1:license "https://creativecommons.org/publicdomain/zero/1.0/"^^xsd:anyURI ; - pav:authoredOn "2020-05-30"^^xsd:date ; - sssom:mapping_set_id "https://w3id.org/sssom/mapping/tests/data/basic.tsv"^^xsd:anyURI ; - sssom:mapping_tool "https://github.com/cmungall/rdf_matcher" . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:lung ; - owl:annotatedTarget x:lung ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lungs" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:foot ; - owl:annotatedTarget x:foot ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_element ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "feet" ; + sssom:subject_label "bone element" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; - sssom:confidence 8e-01 ; + owl:annotatedSource x:hand ; + owl:annotatedTarget y:hand ; + sssom:confidence 8.212624e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; - owl:annotatedTarget y:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissues" ; + sssom:object_label "hands" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_label "manus" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:liver ; - owl:annotatedTarget y:liver ; + owl:annotatedTarget x:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; + sssom:object_label "liver" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -990,214 +962,193 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_tissue ; sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bone tissue" ; sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; + owl:annotatedSource y:lung ; + owl:annotatedTarget z:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; + sssom:subject_label "lungs" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:organ ; - owl:annotatedTarget z:organ ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget y:appendage ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; + sssom:object_label "appendages" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organs" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "appendage" ; + sssom:subject_match_field rdfs:label, + skos:prefLabel ; + sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "mock data" ; + rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource d:something ; - owl:annotatedTarget a:something ; - sssom:confidence 8.2e-01 ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8.497789e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yyyyyy" ; - sssom:object_match_field rdfs:label ; - sssom:object_source a:example ; - sssom:predicate_modifier "Not" ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YYYYY" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source d:example . + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget y:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource a:something ; - owl:annotatedTarget c:something ; - sssom:confidence 8.3e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:organ ; + owl:annotatedTarget z:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "xyxyxy" ; + sssom:object_label "ORGAN" ; sssom:object_match_field rdfs:label ; - sssom:object_source c:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "XYXYX" ; + sssom:subject_label "organ" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source a:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget z:organ ; + owl:annotatedSource x:heart ; + owl:annotatedTarget z:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; + sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:tissue ; - owl:annotatedTarget z:tissue ; + owl:annotatedSource y:appendage ; + owl:annotatedTarget z:appendage ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; + sssom:object_label "APPENDAGE" ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissues" ; + sssom:subject_label "appendages" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget y:liver ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource z:lung ; + owl:annotatedTarget y:lung ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "liver" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "lungs" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:organ ; + owl:annotatedTarget z:organ ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_label "ORGAN" ; + sssom:object_match_field rdfs:label ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "organ" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget y:heart ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource z:heart ; + owl:annotatedTarget x:heart ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "heart" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hearts" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_label "heart" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 7.64651e-01 ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8.497789e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone element" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasRelatedSynonym ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "manus" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; @@ -1220,131 +1171,113 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_element ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bone tissue" ; sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:heart ; - owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget z:organ ; + owl:annotatedSource x:hand ; + owl:annotatedTarget y:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; + sssom:object_label "hands" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; + sssom:subject_label "manus" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2e-01 ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 7.64651e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "bone element" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "bones" ; + sssom:object_match_field oboInOwl:hasRelatedSynonym ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "bone element" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hindlimb ; - owl:annotatedTarget x:hindlimb ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; + owl:annotatedSource y:heart ; + owl:annotatedTarget z:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; + sssom:subject_label "hearts" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget z:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "foot" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "pes" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; + owl:annotatedSource y:tissue ; owl:annotatedTarget x:tissue ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -1352,185 +1285,185 @@ x:bone_element a owl:Class ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:organ ; - owl:annotatedTarget x:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; - sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organs" ; + sssom:subject_label "tissues" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; - owl:annotatedTarget y:eye ; + owl:annotatedSource x:heart ; + owl:annotatedTarget y:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; + sssom:object_label "hearts" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; + sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + rdfs:comment "mock data" ; + owl:annotatedProperty rdfs:subClassOf ; + owl:annotatedSource a:something ; + owl:annotatedTarget b:something ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "xxxxx" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_label "xxxxxx" ; + sssom:object_match_field rdfs:label ; + sssom:object_source b:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "XXXXX" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source a:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hindlimb ; - owl:annotatedTarget z:hindlimb ; - sssom:confidence 8.818562e-01 ; + owl:annotatedSource z:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; - sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_label "pes" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:lung ; - owl:annotatedTarget y:lung ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:eye ; + owl:annotatedTarget y:eye ; + sssom:confidence 5.688741e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "ey" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; + sssom:object_label "eyes" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; + sssom:subject_label "eye" ; sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:foot ; - owl:annotatedTarget z:foot ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "feet" ; + sssom:subject_label "manus" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget y:foot ; + owl:annotatedSource x:heart ; + owl:annotatedTarget z:organ ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "feet" ; + sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; + sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget z:hand ; + owl:annotatedSource y:eye ; + owl:annotatedTarget x:eye ; + sssom:confidence 5.688741e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "ey" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "eye" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "eyes" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:foot ; + owl:annotatedTarget y:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "feet" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; + sssom:subject_label "pes" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; @@ -1550,38 +1483,20 @@ x:bone_element a owl:Class ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource c:something ; - owl:annotatedTarget b:something ; - sssom:confidence 8.4e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yxyxyx" ; - sssom:object_match_field rdfs:label ; - sssom:object_source b:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YXYXY" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source c:example . - [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; - sssom:confidence 8.497789e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; + sssom:subject_label "manus" ; sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . @@ -1605,87 +1520,69 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:liver ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; + owl:annotatedSource y:bone ; owl:annotatedTarget z:bone_tissue ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002481" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource c:something ; - owl:annotatedTarget d:something ; - sssom:confidence 8.1e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yyyyyy" ; - sssom:object_match_field rdfs:label ; - sssom:object_source d:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YYYYY" ; + sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source c:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:bone_element ; owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; + sssom:confidence 6.967305e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "bone el" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bones" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasRelatedSynonym ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:liver ; - owl:annotatedTarget x:liver ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:tissue ; + owl:annotatedTarget z:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_label "TISSUE" ; + sssom:object_match_field rdfs:label ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "tissues" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:eyeball ; + owl:annotatedTarget x:eyeball ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0010230" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "eyeball" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -1693,51 +1590,87 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2e-01 ; + owl:annotatedSource z:organ ; + owl:annotatedTarget y:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "organ" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "organs" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "ORGAN" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 8e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "foot" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "pes" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:organ ; + owl:annotatedTarget x:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "organ" ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "organs" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:hindlimb ; + owl:annotatedTarget x:hindlimb ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "hindlimb" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "hindlimb" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "hindlimb" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . + [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:region ; - owl:annotatedTarget y:region ; + owl:annotatedTarget x:region ; sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "regions" ; + sssom:object_label "region" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "REGION" ; sssom:subject_match_field rdfs:label ; @@ -1746,14 +1679,67 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:liver ; + owl:annotatedTarget z:liver ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "liver" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:liver ; + owl:annotatedTarget x:liver ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "liver" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "liver" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "livers" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0001474" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bones" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 8.497789e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "foot" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "pes" ; sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -1763,237 +1749,295 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget y:hand ; + owl:annotatedSource z:hindlimb ; + owl:annotatedTarget x:hindlimb ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "hindlimb" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "hindlimb" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "hindlimb" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:eye ; + owl:annotatedTarget y:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; + sssom:object_label "eyes" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; + sssom:subject_label "eye" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget z:bone_element ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget z:appendage ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "appendage" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "APPENDAGE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "appendage" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:appendage ; - owl:annotatedTarget x:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "UBERON:0002481" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendage" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendages" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "mock data" ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource d:something ; + owl:annotatedTarget a:something ; + sssom:confidence 8.2e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "xxxxx" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "yyyyyy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source a:example ; + sssom:predicate_modifier "Not" ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "YYYYY" ; sssom:subject_match_field rdfs:label ; + sssom:subject_source d:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:liver ; + owl:annotatedTarget x:liver ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0002107" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "liver" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "livers" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource y:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "hands" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "mock data" ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource a:something ; + owl:annotatedTarget c:something ; + sssom:confidence 8.3e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "xxxxx" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "xyxyxy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source c:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "XYXYX" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source a:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:organ ; + owl:annotatedTarget y:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "organs" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "organ" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:lung ; - owl:annotatedTarget z:lung ; + owl:annotatedSource x:lung ; + owl:annotatedTarget z:organ ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lungs" ; + sssom:subject_label "lung" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget z:region ; + owl:annotatedSource y:region ; + owl:annotatedTarget x:region ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; + sssom:object_label "region" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; + sssom:subject_label "regions" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource z:eye ; + owl:annotatedTarget x:eye ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "eye" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget y:lung ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource y:eye ; + owl:annotatedTarget z:eye ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "lung" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_label "eyes" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; + owl:annotatedSource x:bone_element ; owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bones" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8.497789e-01 ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; + sssom:object_label "bones" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:appendage ; - owl:annotatedTarget x:appendage ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedTarget y:appendage ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendage" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendage" ; + sssom:object_label "appendages" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "APPENDAGE" ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty rdfs:subClassOf ; - owl:annotatedSource a:something ; - owl:annotatedTarget b:something ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "xxxxxx" ; - sssom:object_match_field rdfs:label ; - sssom:object_source b:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "XXXXX" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source a:example . - [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:bone_element ; owl:annotatedTarget z:bone_element ; - sssom:confidence 2e-01 ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; @@ -2008,138 +2052,183 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_element ; - sssom:confidence 2.612039e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget z:appendage ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "APPENDAGE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "appendage" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hindlimb ; - owl:annotatedTarget z:hindlimb ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 6.967305e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "bone el" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; + sssom:object_label "bone element" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; + sssom:subject_label "bones" ; + sssom:subject_match_field oboInOwl:hasRelatedSynonym ; + sssom:subject_source y:example . + +[] a owl:Ontology ; + dc1:creator orcid:1234, + orcid:5678 ; + dc1:license "https://creativecommons.org/publicdomain/zero/1.0/"^^xsd:anyURI ; + pav:authoredOn "2020-05-30"^^xsd:date ; + sssom:mapping_set_id "https://w3id.org/sssom/mapping/tests/data/basic.tsv"^^xsd:anyURI ; + sssom:mapping_tool "https://github.com/cmungall/rdf_matcher" . + +[] a owl:Axiom ; + rdfs:comment "mock data" ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource c:something ; + owl:annotatedTarget d:something ; + sssom:confidence 8.1e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "xxxxx" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "yyyyyy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source d:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "YYYYY" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source c:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eye ; - owl:annotatedTarget y:eye ; + owl:annotatedSource x:liver ; + owl:annotatedTarget y:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; + sssom:object_label "livers" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "liver" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:heart ; - owl:annotatedTarget y:heart ; + owl:annotatedSource x:foot ; + owl:annotatedTarget z:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hearts" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "pes" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; + owl:annotatedTarget y:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; + sssom:object_label "feet" ; sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source y:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:region ; + owl:annotatedTarget x:region ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "region" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "region" ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "REGION" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget y:region ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "UBERON:0002481" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "regions" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "." ; + rdfs:comment "mock data" ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget y:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource c:something ; + owl:annotatedTarget b:something ; + sssom:confidence 8.4e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "xxxxx" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organs" ; + sssom:object_label "yxyxyx" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source b:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "YXYXY" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source c:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:bone_element ; - owl:annotatedTarget y:bone ; + owl:annotatedTarget x:bone_element ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -2147,14 +2236,14 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_tissue ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_element ; sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; + sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -2164,259 +2253,254 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; + owl:annotatedSource z:lung ; + owl:annotatedTarget x:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; + sssom:object_label "lung" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource y:bone ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; - sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget z:organ ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:region ; + owl:annotatedTarget y:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_label "regions" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_label "REGION" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:heart ; owl:annotatedTarget x:heart ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "heart" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "heart" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "hearts" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; - owl:annotatedTarget z:eye ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget y:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource x:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 8.497789e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "foot" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissues" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "pes" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget z:liver ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget z:tissue ; + sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "tissue" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "TISSUE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "tissue" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:region ; - owl:annotatedTarget x:region ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "regions" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hindlimb ; - owl:annotatedTarget x:hindlimb ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:region ; + owl:annotatedTarget y:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; + sssom:object_label "regions" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; + sssom:subject_label "region" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:region ; - owl:annotatedTarget x:region ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget x:tissue ; sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; + sssom:object_label "tissue" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "REGION" ; + sssom:subject_label "TISSUE" ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; - owl:annotatedTarget y:eye ; - sssom:confidence 5.688741e-01 ; + owl:annotatedSource z:heart ; + owl:annotatedTarget y:heart ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "ey" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "hearts" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; + owl:annotatedSource y:bone ; owl:annotatedTarget x:bone_element ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:confidence 7.64651e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "bone element" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bones" ; + sssom:subject_match_field oboInOwl:hasRelatedSynonym ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget z:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource y:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_label "hands" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; + owl:annotatedSource y:organ ; owl:annotatedTarget z:organ ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -2424,48 +2508,49 @@ x:bone_element a owl:Class ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; + sssom:subject_label "organs" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; - owl:annotatedTarget z:liver ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "lung" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eyeball ; - owl:annotatedTarget x:eyeball ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0010230" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyeball" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:eye ; + owl:annotatedSource x:eye ; owl:annotatedTarget z:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; @@ -2475,201 +2560,134 @@ x:bone_element a owl:Class ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eyes" ; + sssom:subject_label "eye" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_element ; + owl:annotatedSource z:liver ; + owl:annotatedTarget y:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "livers" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget y:heart ; + owl:annotatedSource y:foot ; + owl:annotatedTarget x:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hearts" ; + sssom:object_label "pes" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; + sssom:subject_label "feet" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget z:region ; + owl:annotatedSource x:hindlimb ; + owl:annotatedTarget z:hindlimb ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "hindlimb" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; + sssom:object_label "hindlimb" ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; + sssom:subject_label "hindlimb" ; sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 6.967305e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:hindlimb ; + owl:annotatedTarget z:hindlimb ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone el" ; + sssom:match_string "hindlimb" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; + sssom:object_label "hindlimb" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field oboInOwl:hasRelatedSynonym ; - sssom:subject_source y:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; - sssom:confidence 8.497789e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "hindlimb" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:lung ; - owl:annotatedTarget x:lung ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource y:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8.212624e-01 ; sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "lung" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lungs" ; + sssom:subject_label "hands" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:heart ; - owl:annotatedTarget z:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hearts" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8.497789e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget z:tissue ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:organ ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissue" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; + sssom:object_label "organ" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource z:appendage ; + owl:annotatedTarget x:appendage ; + sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "appendage" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "appendage" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "APPENDAGE" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; @@ -2688,22 +2706,4 @@ x:bone_element a owl:Class ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:eye ; - owl:annotatedTarget x:eye ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eye" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eyes" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . -