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start.sh
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start.sh
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#ash master_scripts/startHmmscan.sh arath proteomes/arath/uniprot-proteome%3AUP000006548.fasta virNOG
#bash master_scripts/startHmmscan.sh selml proteomes/selml/uniprot-proteome%3AUP000001514.fasta virNOG
#bash master_scripts/startHmmscan.sh orysj proteomes/orysj/uniprot-proteome%3AUP000000763.fasta virNOG
#bash master_scripts/startHmmscan.sh braol proteomes/braol/uniprot-brassica+oleracea.fasta virNOG
#bash master_scripts/startHmmscan.sh cerri proteomes/cerri_201602/McWhite201602_combined_prot_full_NR_uc097seeds.fasta virNOG
#bash master_scripts/startHmmscan.sh traes proteomes/traes/ta_IWGSC_MIPSv2.2_HighConf_REPR_UNMAPPED_PROTEIN_2014Jul18.fasta virNOG
#bash master_scripts/startHmmscan.sh traes proteomes/traes/uniprot-triticum%3AUP000019116.fasta virNOG
#bash master_scripts/startHmmscan.sh cerri_trinity proteomes/cerri_trinity/FernTrinity_prots.fasta euNOG
#bash master_scripts/startHmmscan.sh cerri_trinity proteomes/cerri_trinity/FernTrinity_prots.fasta virNOG
#bash master_scripts/startHmmscan.sh human proteomes/human/uniprot-proteome_human_reviewed.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh chlre proteomes/chlre/uniprot-proteome%3AUP000006906.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh arath proteomes/arath/uniprot-proteome%3AUP000006548.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh selml proteomes/selml/uniprot-proteome%3AUP000001514.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh orysj proteomes/orysj/uniprot-proteome%3AUP000000763.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh braol proteomes/braol/uniprot-brassica+oleracea.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh cerri proteomes/cerri_201602/McWhite201602_combined_prot_full_NR_uc097seeds.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh traes proteomes/traes/ta_IWGSC_MIPSv2.2_HighConf_REPR_UNMAPPED_PROTEIN_2014Jul18.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh traes proteomes/traes/uniprot-triticum%3AUP000019116.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh cerri_trinity proteomes/cerri_trinity/FernTrinity_prots.fasta euNOG
#bash master_scripts/startHmmscan.sh cerri_trinity proteomes/cerri_trinity/FernTrinity_prots.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh xenla_tk proteomes/xenla_tk/XENLA_JGIv18pV4_prot.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh xentr_tk proteomes/xentr_tk/XENTR_JGIv90pV2_prot_final.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh hymbo proteomes/hymbo/Xtr_Hym_PEP.fasta euNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh xentr_tk proteomes/xentr_tk/XENTR_JGIv90pV2_prot_final.fasta veNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh xenla_tk proteomes/xenla_tk/XENLA_JGIv18pV4_prot.fasta veNOG all_annotations.csv
#bash master_scripts/startHmmscan.sh hymbo proteomes/hymbo/Xtr_Hym_PEP.fasta veNOG all_annotations.csv
bash master_scripts/startHmmscan.sh human proteomes/human/uniprot-proteome_human_reviewed.fasta veNOG veNOG.annotations.csv