forked from Rdatatable/data.table
-
Notifications
You must be signed in to change notification settings - Fork 0
/
.gitlab-ci.yml
465 lines (430 loc) · 21.1 KB
/
.gitlab-ci.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
variables:
CRAN_MIRROR: "https://cloud.r-project.org"
_R_CHECK_FORCE_SUGGESTS_: "false"
_R_CHECK_NO_STOP_ON_TEST_ERROR_: "true"
_R_CHECK_SYSTEM_CLOCK_: "false" ## https://stackoverflow.com/questions/63613301/r-cmd-check-note-unable-to-verify-current-time
TZ: "UTC" ## to avoid 'Failed to create bus connection' from timedatectl via Sys.timezone() on Docker with R 3.4.
## Setting TZ for all GLCI jobs to isolate them from timezone. We could have a new GLCI job to test under
## a non-UTC timezone, although, that's what we do routinely in dev.
R_REL_VERSION: "4.1"
R_DEVEL_VERSION: "4.2"
R_OLDREL_VERSION: "4.0"
stages:
- dependencies
- build
- test
- integration
- deploy
.artifacts-template: &artifacts
artifacts:
expire_in: 2 weeks
when: always
paths:
- bus
mirror-packages: ## mirror all recursive dependencies, source and win.binary of data.table suggests from DESCRIPTION
stage: dependencies
tags:
- linux
image: registry.gitlab.com/jangorecki/dockerfiles/r-base-dev
cache:
paths:
- bus/$CI_BUILD_NAME/cran
script:
- echo 'source(".ci/ci.R")' >> .Rprofile
- mkdir -p bus/$CI_BUILD_NAME/cran/src/contrib
- Rscript -e 'mirror.packages(dcf.dependencies("DESCRIPTION", "all"), repos=Sys.getenv("CRAN_MIRROR"), repodir="bus/mirror-packages/cran")'
- rm bus/$CI_BUILD_NAME/cran/src/contrib/PACKAGES.rds ## fallback to PACKAGES dcf so available.packages:3.4.4 works
- Rscript -e 'sapply(simplify=FALSE, setNames(nm=Sys.getenv(c("R_REL_VERSION","R_DEVEL_VERSION","R_OLDREL_VERSION"))), function(binary.ver) mirror.packages(type="win.binary", dcf.dependencies("DESCRIPTION", "all"), repos=Sys.getenv("CRAN_MIRROR"), repodir="bus/mirror-packages/cran", binary.ver=binary.ver))'
<<: *artifacts
mirror-other-packages: ## mirror integration suggests from pkgs at the top of inst/tests/other.Rraw
stage: dependencies
tags:
- linux
image: registry.gitlab.com/jangorecki/dockerfiles/r-base-dev
cache:
paths:
- bus/$CI_BUILD_NAME/cran
script:
- echo 'source(".ci/ci.R")' >> .Rprofile
- mkdir -p bus/$CI_BUILD_NAME/cran/src/contrib
- Rscript -e 'eval(parse("inst/tests/other.Rraw", n=1L)); mirror.packages(pkgs, repos=Sys.getenv("CRAN_MIRROR"), repodir="bus/mirror-other-packages/cran")'
<<: *artifacts
build: ## build data.table sources as tar.gz archive
stage: build
tags:
- linux
image: registry.gitlab.com/jangorecki/dockerfiles/r-builder
needs: ["mirror-packages"]
before_script:
- Rscript -e 'install.packages(c("knitr","rmarkdown"), repos=file.path("file:",normalizePath("bus/mirror-packages/cran")), quiet=TRUE)'
- rm -r bus
- echo "Revision:" $CI_BUILD_REF >> ./DESCRIPTION
script:
- R CMD build .
- mkdir -p bus/$CI_BUILD_NAME/cran/src/contrib
- mv $(ls -1t data.table_*.tar.gz | head -n 1) bus/$CI_BUILD_NAME/cran/src/contrib/.
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/build/cran"), fields="Revision", addFiles=TRUE)'
- rm bus/$CI_BUILD_NAME/cran/src/contrib/PACKAGES.rds ## fallback to PACKAGES dcf so available.packages:3.4.4 works
<<: *artifacts
.test-install-deps: &install-deps
- Rscript -e 'source(".ci/ci.R"); install.packages(dcf.dependencies("DESCRIPTION", which="most"), quiet=TRUE)'
.test-install-deps-win: &install-deps-win
- Rscript.exe -e "source('.ci/ci.R'); install.packages(dcf.dependencies('DESCRIPTION', which='most'), quiet=TRUE)"
.test-cp-src: &cp-src
- cp $(ls -1t bus/build/cran/src/contrib/data.table_*.tar.gz | head -n 1) .
.test-cp-src-win: &cp-src-win
- cp.exe $(ls.exe -1t bus/build/cran/src/contrib/data.table_*.tar.gz | head.exe -n 1) .
.test-mv-src: &mv-src
- mkdir -p bus/$CI_BUILD_NAME && mv $(ls -1t data.table_*.tar.gz | head -n 1) bus/$CI_BUILD_NAME
.test-mv-src-win: &mv-src-win
- mkdir.exe -p bus/$CI_BUILD_NAME; mv.exe $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1) bus/$CI_BUILD_NAME
.test-rm-src: &rm-src
- rm $(ls -1t data.table_*.tar.gz | head -n 1)
.test-rm-src-win: &rm-src-win
- rm.exe $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
.test-mv-bin-win: &mv-bin-win
- mkdir.exe -p cran/bin/windows/contrib/$R_VERSION; mv.exe $(ls.exe -1t data.table_*.zip | head.exe -n 1) cran/bin/windows/contrib/$R_VERSION
.test-install-r-rel-win: &install-r-rel-win
- curl.exe -s -o ../R-rel.exe https://cloud.r-project.org/bin/windows/base/old/4.1.0/R-4.1.0-win.exe; Start-Process -FilePath ..\R-rel.exe -ArgumentList "/VERYSILENT /DIR=C:\R" -NoNewWindow -Wait
.test-install-r-devel-win: &install-r-devel-win
- curl.exe -s -o ../R-devel.exe https://cloud.r-project.org/bin/windows/base/R-devel-win.exe; Start-Process -FilePath ..\R-devel.exe -ArgumentList "/VERYSILENT /DIR=C:\R" -NoNewWindow -Wait
.test-install-r-oldrel-win: &install-r-oldrel-win
- curl.exe -s -o ../R-oldrel.exe https://cloud.r-project.org/bin/windows/base/old/4.0.5/R-4.0.5-win.exe; Start-Process -FilePath ..\R-oldrel.exe -ArgumentList "/VERYSILENT /DIR=C:\R" -NoNewWindow -Wait
.test-install-rtools-win: &install-rtools-win
- curl.exe -s -o ../rtools.exe https://cloud.r-project.org/bin/windows/Rtools/rtools40-x86_64.exe; Start-Process -FilePath ..\rtools.exe -ArgumentList "/VERYSILENT /DIR=C:\rtools40" -NoNewWindow -Wait
.test-template: &test
stage: test
needs: ["mirror-packages","build"]
<<: *artifacts
.test-lin-template: &test-lin
<<: *test
tags:
- linux
.test-cran-lin-template: &test-cran-lin
<<: *test-lin
variables:
_R_CHECK_CRAN_INCOMING_: "TRUE"
_R_CHECK_CRAN_INCOMING_REMOTE_: "FALSE"
before_script:
- *install-deps
- *cp-src
- rm -r bus
script:
- *mv-src
- cd bus/$CI_BUILD_NAME
- R CMD check --as-cran --no-manual $(ls -1t data.table_*.tar.gz | head -n 1)
- *rm-src
.test-win-template: &test-win
<<: *test
tags:
- windows
- shared-windows
#.test-mac-template: &test-mac
# <<: *test
# tags:
# - macosx
test-rel-lin: ## most comprehensive tests, force all suggests, also integration tests, using gcc -O3 -flto -fno-common -Wunused-result
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-builder
needs: ["mirror-packages","mirror-other-packages","build"]
variables:
_R_CHECK_CRAN_INCOMING_: "FALSE"
_R_CHECK_CRAN_INCOMING_REMOTE_: "FALSE"
_R_CHECK_FORCE_SUGGESTS_: "TRUE"
_R_CHECK_TESTS_NLINES_: "0"
OPENBLAS_MAIN_FREE: "1"
TEST_DATA_TABLE_WITH_OTHER_PACKAGES: "TRUE"
before_script:
- Rscript -e 'source(".ci/ci.R"); eval(parse("inst/tests/other.Rraw", n=1L)); install.packages(c(dcf.dependencies("DESCRIPTION", which="all"), pkgs), quiet=TRUE, repos=c(getOption("repos"), file.path("file:", normalizePath("bus/mirror-other-packages/cran", mustWork=FALSE))))'
- *cp-src
- rm -r bus
- mkdir -p ~/.R
- echo 'CFLAGS=-g -O3 -flto -fno-common -Wunused-result -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
- echo 'CXXFLAGS=-g -O3 -flto -fno-common -Wunused-result -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
script:
- *mv-src
- cd bus/$CI_BUILD_NAME
- R CMD check $(ls -1t data.table_*.tar.gz | head -n 1)
- *rm-src
- (! grep "warning:" data.table.Rcheck/00install.out)
test-rel-vanilla-lin: ## minimal, no suggested deps, no vignettes or manuals, measure memory, using gcc -O0 -fno-openmp
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-base-dev
variables:
TEST_DATA_TABLE_MEMTEST: "TRUE"
before_script:
- *cp-src
- rm -r bus
- mkdir -p ~/.R
- echo 'CFLAGS=-g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' > ~/.R/Makevars
- echo 'CXXFLAGS=-g -O0 -fno-openmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
script:
- *mv-src
- cd bus/$CI_BUILD_NAME
- R CMD check --no-manual --ignore-vignettes $(ls -1t data.table_*.tar.gz | head -n 1)
- *rm-src
test-rel-cran-lin: ## R-release on Linux, extra NOTEs check and build pdf manual thus not from cran-lin template
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-builder
variables:
_R_CHECK_CRAN_INCOMING_: "TRUE" ## stricter --as-cran checks should run in dev pipelines continuously (not sure what they are though)
_R_CHECK_CRAN_INCOMING_REMOTE_: "FALSE" ## Other than no URL checking (takes many minutes) or 'Days since last update 0' NOTEs needed, #3284
_R_CHECK_CRAN_INCOMING_TARBALL_THRESHOLD_: "7500000" ## effective from R 4.1.0
before_script:
- *install-deps
- *cp-src
- rm -r bus
- mkdir -p ~/.R
- echo 'CFLAGS=-g0 -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2'> ~/.R/Makevars ## -g0 because -g increases datatable.so size from 0.5MB to 1.5MB and breaches 'installed package size <= 5MB' note
- echo 'CXXFLAGS=-g0 -O2 -fopenmp -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2' >> ~/.R/Makevars
script:
- *mv-src
- cd bus/$CI_BUILD_NAME
- R CMD check --as-cran $(ls -1t data.table_*.tar.gz | head -n 1)
- *rm-src
- >-
Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); if (!identical(l, "Status: OK")) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote("Status: OK"), " but ", shQuote(l)) else q("no")'
test-dev-cran-lin: ## R-devel on Linux, --enable-strict-barrier --disable-long-double, check for new notes and compilation warnings, thus allow_failure
<<: *test-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-devel
allow_failure: true
variables:
_R_CHECK_CRAN_INCOMING_: "TRUE"
_R_CHECK_CRAN_INCOMING_REMOTE_: "FALSE"
_R_S3_METHOD_LOOKUP_BASEENV_AFTER_GLOBALENV_: "FALSE" ## detects S3 method lookup found on search path #4777
_R_S3_METHOD_LOOKUP_REPORT_SEARCH_PATH_USES_: "TRUE"
before_script:
- *install-deps
- *cp-src
- rm -r bus
script:
- *mv-src
- cd bus/$CI_BUILD_NAME
- R CMD check --as-cran --no-manual $(ls -1t data.table_*.tar.gz | head -n 1)
- *rm-src
- (! grep "warning:" data.table.Rcheck/00install.out)
- >-
Rscript -e 'l=tail(readLines("data.table.Rcheck/00check.log"), 1L); if (!identical(l, "Status: 3 NOTEs")) stop("Last line of ", shQuote("00check.log"), " is not ", shQuote("Status: 3 NOTEs"), " (size of tarball, installed package size, top-level files) but ", shQuote(l)) else q("no")'
test-310-cran-lin: ## R-3.1.0 on Linux, stated dependency of R
<<: *test-cran-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-3.1.0
test-344-cran-lin: ## R-3.4.4 on Linux, last R non-altrep version
<<: *test-cran-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-3.4.4
test-350-cran-lin: ## R-3.5.0 on Linux, first R altrep version
<<: *test-cran-lin
image: registry.gitlab.com/jangorecki/dockerfiles/r-3.5.0
test-rel-win: ## R-release on Windows, test and build binaries
<<: *test-win
variables:
R_VERSION: "$R_REL_VERSION"
before_script:
- *install-r-rel-win
- *install-rtools-win
- $ENV:PATH = "C:\R\bin;C:\rtools40\usr\bin;$ENV:PATH"
- *install-deps-win
- *cp-src-win
- rm.exe -r bus
script:
- *mv-src-win
- cd bus/$CI_BUILD_NAME
- R.exe CMD check --no-manual $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
- R.exe CMD INSTALL --build $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
- *rm-src-win
- *mv-bin-win
test-dev-win: ## R-devel on Windows
<<: *test-win
variables:
R_VERSION: "$R_DEVEL_VERSION"
before_script:
- *install-r-devel-win
- *install-rtools-win
- $ENV:PATH = "C:\R\bin;C:\rtools40\usr\bin;$ENV:PATH"
- *install-deps-win
- *cp-src-win
- rm.exe -r bus
script:
- *mv-src-win
- cd bus/$CI_BUILD_NAME
- R.exe CMD check --no-manual --ignore-vignettes $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
- R.exe CMD INSTALL --build $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
- *rm-src-win
- *mv-bin-win
test-old-win: ## R-oldrel on Windows
<<: *test-win
variables:
R_VERSION: "$R_OLDREL_VERSION"
before_script:
- *install-r-oldrel-win
- *install-rtools-win
- $ENV:PATH = "C:\R\bin;C:\rtools40\usr\bin;$ENV:PATH"
- *install-deps-win
- *cp-src-win
- rm.exe -r bus
script:
- *mv-src-win
- cd bus/$CI_BUILD_NAME
- R.exe CMD check --no-manual --ignore-vignettes $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
- R.exe CMD INSTALL --build $(ls.exe -1t data.table_*.tar.gz | head.exe -n 1)
- *rm-src-win
- *mv-bin-win
#test-rel-mac: ## R-release on MacOS, no macosx runner yet
# <<: *test-mac
# variables:
# R_VERSION: "$R_REL_VERSION"
# before_script:
# - *install-deps
# - *cp-src
# - rm -r bus
# script:
# - *mv-src
# - cd bus/$CI_BUILD_NAME
# - R CMD check $(ls -1t data.table_*.tar.gz | head -n 1)
# - R CMD INSTALL --build $(ls -1t data.table_*.tar.gz | head -n 1)
# - mkdir -p cran/bin/macosx/el-capitan/contrib/$R_VERSION
# - mv $(ls -1t data.table_*.tgz | head -n 1) cran/bin/macosx/el-capitan/contrib/$R_VERSION
# - *rm-src
# - *mv-bin-mac
integration: ## merging all artifacts to produce single R repository, documentation and website
stage: integration
image: registry.gitlab.com/jangorecki/dockerfiles/r-pkgdown
tags:
- linux
only:
- master
- tags
needs: ["mirror-packages","build","test-rel-lin","test-rel-cran-lin","test-dev-cran-lin","test-rel-vanilla-lin","test-310-cran-lin","test-344-cran-lin","test-350-cran-lin","test-rel-win","test-dev-win","test-old-win"]
script:
- Rscript -e 'pkgdown::build_site(override=list(destination="./pkgdown"))'
## html manual, vignettes, repos, cran_web, cran_checks
- echo 'source(".ci/ci.R"); source(".ci/publish.R")' >> .Rprofile
## list of available test-* jobs dynamically based on bus/test-* directories
- Rscript -e 'cat("\ntest.jobs <- c(\n"); cat(paste0(" \"",list.files("bus",pattern="^test-"),"\" = \"data.table\""), sep=",\n"); cat(")\n")' >> .Rprofile
- Rscript -e 'sapply(names(test.jobs), check.test, pkg="data.table", simplify=FALSE)'
- mkdir -p bus/$CI_BUILD_NAME
## delete any existing non-dev version of data.table
- rm -f bus/mirror-packages/cran/src/contrib/data.table_*.tar.gz
- rm -f bus/mirror-packages/cran/bin/windows/contrib/$R_REL_VERSION/data.table_*.zip
- rm -f bus/mirror-packages/cran/bin/windows/contrib/$R_DEVEL_VERSION/data.table_*.zip
- rm -f bus/mirror-packages/cran/bin/windows/contrib/$R_OLDREL_VERSION/data.table_*.zip
#- rm -f bus/mirror-packages/cran/bin/macosx/el-capitan/contrib/$R_REL_VERSION/data.table_*.tgz
#- rm -f bus/mirror-packages/cran/bin/macosx/el-capitan/contrib/$R_DEVEL_VERSION/data.table_*.tgz
#- rm -f bus/mirror-packages/cran/bin/macosx/el-capitan/contrib/$R_OLDREL_VERSION/data.table_*.tgz
## merge mirror-packages and R devel packages
- mv bus/mirror-packages/cran bus/$CI_BUILD_NAME/
## publish package sources
- mkdir -p bus/$CI_BUILD_NAME/cran/library bus/$CI_BUILD_NAME/cran/doc
- mv $(ls -1t bus/build/cran/src/contrib/data.table_*.tar.gz | head -n 1) bus/$CI_BUILD_NAME/cran/src/contrib
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="source"), type="source", fields="Revision", addFiles=TRUE)'
## publish binaries
- Rscript -e 'move.bin("test-rel-win", Sys.getenv("R_REL_VERSION"), os.type="windows")'
- Rscript -e 'move.bin("test-dev-win", Sys.getenv("R_DEVEL_VERSION"), os.type="windows")'
- Rscript -e 'move.bin("test-old-win", Sys.getenv("R_OLDREL_VERSION"), os.type="windows")'
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="win.binary", ver=Sys.getenv("R_REL_VERSION")), type="win.binary", fields="Revision", addFiles=TRUE)'
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="win.binary", ver=Sys.getenv("R_DEVEL_VERSION")), type="win.binary", fields="Revision", addFiles=TRUE)'
- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="win.binary", ver=Sys.getenv("R_OLDREL_VERSION")), type="win.binary", fields="Revision", addFiles=TRUE)'
#- Rscript -e 'move.bin("test-rel-mac", Sys.getenv("R_REL_VERSION"), os.type="macosx")'
#- Rscript -e 'move.bin("test-dev-mac", Sys.getenv("R_DEVEL_VERSION"), os.type="macosx")'
#- Rscript -e 'move.bin("test-old-mac", Sys.getenv("R_OLDREL_VERSION"), os.type="macosx")'
#- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="mac.binary.el-capitan", ver=Sys.getenv("R_REL_VERSION")), type="mac.binary.el-capitan", fields="Revision", addFiles=TRUE)'
#- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="mac.binary.el-capitan", ver=Sys.getenv("R_DEVEL_VERSION")), type="mac.binary.el-capitan", fields="Revision", addFiles=TRUE)'
#- Rscript -e 'tools::write_PACKAGES(contrib.url("bus/integration/cran", type="mac.binary.el-capitan", ver=Sys.getenv("R_OLDREL_VERSION")), type="mac.binary.el-capitan", fields="Revision", addFiles=TRUE)'
## install all pkgs to render html and double check successful installation of all devel packages
- mkdir -p /tmp/opencran/library /tmp/opencran/doc/html ## reset R_LIBS_USER to re-install all with html because pkgdown image has pre installed curl knitr
- R_LIBS_USER="" Rscript -e 'install.packages("data.table", dependencies=TRUE, lib="/tmp/opencran/library", repos=file.path("file:",normalizePath("bus/integration/cran")), INSTALL_opts="--html", quiet=TRUE)'
- Rscript -e 'packageVersion("data.table", lib.loc="/tmp/opencran/library")'
## CRAN style web/CRAN_web.css
- wget -q -P bus/integration/cran/web https://cran.r-project.org/web/CRAN_web.css
## web/packages/$pkg/index.html
- Rscript -e 'sapply(rownames(installed.packages(lib.loc="/tmp/opencran/library", priority="NA")), package.index, lib.loc="/tmp/opencran/library")'
## R docs, html, css, icons
- Rscript -e 'doc.copy(repodir="/tmp/opencran")'
## Update packages.html, fix paths
- Rscript -e 'setwd("/tmp/opencran/doc/html"); make.packages.html(lib.loc="../../library", docdir="/tmp/opencran/doc"); tmp<-readLines(f<-"/tmp/opencran/doc/html/packages.html"); writeLines(gsub("file:///../../library","../../library", tmp, fixed=TRUE), f)'
- mv /tmp/opencran/doc bus/integration/cran/
## library html manual, vignettes
- Rscript -e 'lib.copy(lib.from="/tmp/opencran/library")'
## web/checks/$pkg/$job 00install.out, 00check.log, *.Rout, memtest.csv, memtest.png
- Rscript -e 'sapply(names(test.jobs), check.copy, simplify=FALSE)'
## web/packages/$pkg/$pkg.pdf
- Rscript -e 'pdf.copy("data.table", "test-rel-lin")'
## web/checks/check_results_$pkg.html
- Rscript -e 'check.index("data.table", names(test.jobs))'
## web/checks/check_flavors.html
- Rscript -e 'check.flavors(names(test.jobs))'
## pkgdown merge
- Rscript -e 'common_files<-function(path1, path2) intersect(list.files(path1, all.files=TRUE, no..=TRUE), list.files(path2, all.files=TRUE, no..=TRUE)); msg = if (length(f<-common_files("pkgdown","bus/integration/cran"))) paste(c("Following artifacts will be overwritten by pkgdown artifacts:", paste0(" ", f)), collapse="\n") else "No overlapping files from pkgdown artifacts"; message(msg); q("no")'
- mv pkgdown/* bus/integration/cran/
## cleanup artifacts from other jobs
- mkdir tmpbus
- mv bus/$CI_BUILD_NAME tmpbus
- rm -r bus
- mv tmpbus bus
<<: *artifacts
.docker-template: &docker
stage: deploy
tags:
- linux
image: docker
services:
- docker:dind
needs:
- job: build
- job: integration
artifacts: false
before_script:
- sed "s/SRC_IMAGE_NAME/$SRC_IMAGE_NAME/" < .ci/Dockerfile.in > Dockerfile
- docker login -u gitlab-ci-token -p $CI_JOB_TOKEN $CI_REGISTRY
script:
- docker build --pull -t "$CI_REGISTRY_IMAGE/$IMAGE_NAME:$IMAGE_TAG" -f Dockerfile .
- docker run --rm "$CI_REGISTRY_IMAGE/$IMAGE_NAME:$IMAGE_TAG" Rscript -e 'cat(R.version.string, "\ndata.table revision", read.dcf(system.file("DESCRIPTION", package="data.table"), fields="Revision")[[1L]], "\n"); require(data.table); test.data.table()'
- docker push "$CI_REGISTRY_IMAGE/$IMAGE_NAME:$IMAGE_TAG"
docker-r-release: ## data.table on R-release
only:
- master
variables:
SRC_IMAGE_NAME: "r-base-dev"
IMAGE_NAME: "r-release"
IMAGE_TAG: "latest"
<<: *docker
docker-r-release-builder: ## data.table on R-release extended for Rmd vignettes build dependencies
only:
- master
variables:
SRC_IMAGE_NAME: "r-builder"
IMAGE_NAME: "r-release-builder"
IMAGE_TAG: "latest"
<<: *docker
docker-r-devel: ## data.table on R-devel
only:
- master
variables:
SRC_IMAGE_NAME: "r-devel"
IMAGE_NAME: "r-devel"
IMAGE_TAG: "latest"
<<: *docker
docker-tags: ## data.table on R-release fixed version images
only:
- tags
variables:
SRC_IMAGE_NAME: "r-base-dev"
IMAGE_NAME: "r-release"
IMAGE_TAG: $CI_COMMIT_TAG
<<: *docker
pages: ## publish R repository, test jobs summaries, html documentation of all packages in repo, pkgdown
stage: deploy
environment: production
tags:
- linux
only:
- master
image: ubuntu
needs: ["integration"]
script:
- mkdir -p public
- cp -r bus/integration/cran/* public
- cat public/src/contrib/PACKAGES
artifacts: ## publish only when no failure
expire_in: 2 weeks
paths:
- public