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[FEATURE] Prototype a plate-level CLI that parallelizes with SLURM #476

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talonchandler opened this issue Jul 15, 2024 · 1 comment
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@talonchandler
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Our current CLIs take single positions as input, but for large datasets this approach requires the user to manage SLURM, HPC resources, and multiple bash/python scripts.

Here we would like to prototype a revised CLI that has the following features:

  • takes complete ome-zarr plates as input
  • uses submitit to submit SLURM jobs
  • handles resource requests for the user. For example, a phase reconstruction should always require a fixed multiple of the input size of RAM...no need for the user to calculate this.
@talonchandler talonchandler self-assigned this Jul 15, 2024
@talonchandler
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Closed by #477.

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