CI.yml

name: CI

on:
  push:
  pull_request:
  schedule:
  - cron:  '0 12 1 * *'  # 12:00, first day of the month

jobs:
  lint:
    runs-on: ubuntu-latest
    env:
      PYTHON: 3.9
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ env.PYTHON }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ env.PYTHON }}
    - name: Python info
      run: |
        which python
        python --version
    - name: Update apt IPs
      run: sudo apt update
    - name: Install system pacakges
      run: sudo apt install libudunits2-dev libgeos-dev libproj-dev proj-data proj-bin
    - name: Install Tox
      run: |
        python -m pip install --upgrade pip
        python -m pip install tox
    - name: Check format
      run: tox -e format
    - name: Run linters
      run: tox -e lint

  docs:
    runs-on: ubuntu-latest
    env:
      PYTHON: 3.9
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ env.PYTHON }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ env.PYTHON }}
    - name: Python info
      run: |
        which python
        python --version
    - name: Install system packages
      run: sudo apt install libudunits2-dev libgeos-dev libproj-dev proj-data proj-bin pandoc
    - name: Install Tox
      run: |
        python -m pip install --upgrade pip
        python -m pip install tox
    - name: Build docs
      run: tox -e docs

  venv:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        python-version: [3.9, '3.10', '3.11']
        experimental: [false]
        os: [ubuntu-22.04]
        #include:
        #  - python-version: '3.12'
        #    experimental: true        
        #    os: ubuntu-22.04
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - name: Python info
      run: |
        which python
        python --version
    - name: Update apt IPs
      run: sudo apt update
    - name: Install system packages
      run: sudo apt install libudunits2-dev libgeos-dev libproj-dev proj-data proj-bin
    - name: Cache pip and tox
      uses: actions/cache@v3
      if: ${{ ! matrix.experimental }}
      with:
        path: |
          ~/.cache/pip
          ~/.cache/srtm
          .tox
        key: ${{ matrix.os }}-tox-${{ matrix.python-version }}-${{ hashFiles('setup.cfg', 'pyproject.toml') }}
    - name: Install Tox
      run: |
        python -m pip install --upgrade pip
        python -m pip install tox
    - name: Run test
      continue-on-error: ${{ matrix.experimental }}
      run: tox -e py

  conda:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: [3.9, '3.10', '3.11']
        experimental: [false]
    defaults:
      run:
        shell: bash -l {0}
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ matrix.python-version }}
      uses: conda-incubator/setup-miniconda@v2
      with:
        python-version: ${{ matrix.python-version }}
        activate-environment: pya
        environment-file: pyaerocom_env.yml
    - name: Conda info
      run: |
        conda --version
        conda info --envs
        which python
        python --version
    - name: Install pyaerocom
      run: python -m pip install . --no-deps
    - name: Run pytest
      continue-on-error: ${{ matrix.experimental }}
      run: pytest -ra -q --cov --no-cov-on-fail --cov-report xml
    - name: Upload coverage to Codecov
      if: ${{ success() }}
      uses: codecov/codecov-action@v3
      with:
          file: ./coverage.xml
          flags: unittests