From e85da5e35ef012ee7a69fae101f520906411cba9 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Mon, 15 Jan 2024 15:14:31 +0000 Subject: [PATCH] Update documentation --- _modules/pysurfex/cli.html | 7 +++++++ _modules/pysurfex/cmd_parsing.html | 20 ++++++++++++++++++++ _modules/pysurfex/netcdf.html | 4 ++++ _sources/index.rst.txt | 2 +- objects.inv | Bin 3895 -> 3893 bytes searchindex.js | 2 +- 6 files changed, 33 insertions(+), 2 deletions(-) diff --git a/_modules/pysurfex/cli.html b/_modules/pysurfex/cli.html index 89aec06..9612c59 100644 --- a/_modules/pysurfex/cli.html +++ b/_modules/pysurfex/cli.html @@ -203,6 +203,13 @@

Source code for pysurfex.cli

                 fileformat = kwargs["sd_format"]
             if "sd_converter" in kwargs and kwargs["sd_converter"] is not None:
                 converter = kwargs["sd_converter"]
+        elif var == "sea_ice_thickness":
+            if "icetk_file" in kwargs and kwargs["icetk_file"] is not None:
+                inputfile = kwargs["icetk_file"]
+            if "icetk_format" in kwargs and kwargs["icetk_format"] is not None:
+                fileformat = kwargs["icetk_format"]
+            if "icetk_converter" in kwargs and kwargs["icetk_converter"] is not None:
+                converter = kwargs["icetk_converter"]
         elif var == "cloud_base":
             if "cb_file" in kwargs and kwargs["cb_file"] is not None:
                 inputfile = kwargs["cb_file"]
diff --git a/_modules/pysurfex/cmd_parsing.html b/_modules/pysurfex/cmd_parsing.html
index d3578e6..a5eb6b7 100644
--- a/_modules/pysurfex/cmd_parsing.html
+++ b/_modules/pysurfex/cmd_parsing.html
@@ -654,6 +654,25 @@ 
Source code for pysurfex.cmd_parsing
         choices=["none", "sweclim", "swe2sd", "sdp"],
     )
 
+    parser.add_argument(
+        "-icetk_file", type=str, default=None, help="Ice thickness file", nargs="?"
+    )
+    parser.add_argument(
+        "-icetk_format",
+        type=str,
+        default=None,
+        help="Ice thickness file format",
+        nargs="?",
+        choices=["grib1", "grib2", "netcdf", "surfex", "fa"],
+    )
+    parser.add_argument(
+        "--icetk_converter",
+        type=str,
+        default="none",
+        help="",
+        nargs="?",
+    )
+
     parser.add_argument(
         "-cb_file", type=str, default=None, help="Cloud base file", nargs="?"
     )
@@ -757,6 +776,7 @@ 
Source code for pysurfex.cmd_parsing
             "air_temperature_2m",
             "relative_humidity_2m",
             "surface_snow_thickness",
+            "sea_ice_thickness",
             "cloud_base",
             "surface_soil_moisture",
         ],
diff --git a/_modules/pysurfex/netcdf.html b/_modules/pysurfex/netcdf.html
index b4cfe3a..c182978 100644
--- a/_modules/pysurfex/netcdf.html
+++ b/_modules/pysurfex/netcdf.html
@@ -679,6 +679,7 @@ 
Source code for pysurfex.netcdf
         "relative_humidity_2m": "relative_humidity",
         "altitude": "altitude",
         "surface_snow_thickness": "surface_snow_thickness",
+        "sea_ice_thickness": "sea_ice_thickness",
         "surface_soil_moisture": "surface_soil_moisture",
         "cloud_base": "cloud_base",
         "land_area_fraction": "land_area_fraction",
@@ -688,6 +689,7 @@ 
Source code for pysurfex.netcdf
         "relative_humidity_2m": "Screen level relative humidity (RH2M)",
         "altitude": "Altitude",
         "surface_snow_thickness": "Surface snow thickness",
+        "sea_ice_thickness": "Sea ice thickness",
         "surface_soil_moisture": "Surface soil moisture",
         "cloud_base": "Cloud base",
         "land_area_fraction": "Land Area Fraction",
@@ -697,6 +699,7 @@ 
Source code for pysurfex.netcdf
         "relative_humidity_2m": "1",
         "altitude": "m",
         "surface_snow_thickness": "m",
+        "sea_ice_thickness": "m",
         "surface_soil_moisture": "m3/m3",
         "cloud_base": "m",
         "land_area_fraction": "1",
@@ -706,6 +709,7 @@ 
Source code for pysurfex.netcdf
         "relative_humidity_2m": "9.96921e+36",
         "altitude": "9.96921e+36",
         "surface_snow_thickness": "9.96921e+36",
+        "sea_ice_thickness": "9.96921e+36",
         "surface_soil_moisture": "9.96921e+36",
         "cloud_base": "9.96921e+36",
         "land_area_fraction": "9.96921e+36",
diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt
index 558af3a..113076b 100644
--- a/_sources/index.rst.txt
+++ b/_sources/index.rst.txt
@@ -1,5 +1,5 @@
 .. SURFEX Python API documentation master file, created by
-   auto_sphinx.py on Wed Dec 20 08:51:35 2023
+   auto_sphinx.py on Mon Jan 15 15:14:19 2024
    You can adapt this file completely to your liking, but it should at least
    contain the root `toctree` directive.
 
diff --git a/objects.inv b/objects.inv
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diff --git a/searchindex.js b/searchindex.js
index c42fdd1..e9083dc 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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method)": [[9, "pysurfex.variable.Variable.read_var_points"]], "read_variable() (pysurfex.variable.variable method)": [[9, "pysurfex.variable.Variable.read_variable"]], "remove_existing_file() (in module pysurfex.util)": [[9, "pysurfex.util.remove_existing_file"]], "rmse() (in module pysurfex.obsmon)": [[9, "pysurfex.obsmon.rmse"]], "rotate_geographic_wind() (pysurfex.variable.variable method)": [[9, "pysurfex.variable.Variable.rotate_geographic_wind"]], "rotate_wind_to_geographic() (pysurfex.interpolation.interpolation method)": [[9, "pysurfex.interpolation.Interpolation.rotate_wind_to_geographic"]], "run() (pysurfex.run.batchjob method)": [[9, "pysurfex.run.BatchJob.run"]], "run_first_guess_for_oi() (in module pysurfex.cli)": [[9, "pysurfex.cli.run_first_guess_for_oi"]], "run_gridpp() (in module pysurfex.cli)": [[9, "pysurfex.cli.run_gridpp"]], "run_hm2pysurfex() (in module pysurfex.cli)": [[9, "pysurfex.cli.run_hm2pysurfex"]], "run_masterodb() (in module pysurfex.cli)": [[9, 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(pysurfex.variable.variable method)": [[9, "pysurfex.variable.Variable.set_var"]], "shape2ign() (in module pysurfex.geo)": [[9, "pysurfex.geo.shape2ign"]], "soda() (in module pysurfex.cli)": [[9, "pysurfex.cli.soda"]], "sub() (pysurfex.namelist_legacy.namelist static method)": [[9, "pysurfex.namelist_legacy.Namelist.sub"]], "subset() (pysurfex.geo.cartesian method)": [[9, "pysurfex.geo.Cartesian.subset"]], "subset() (pysurfex.geo.confproj method)": [[9, "pysurfex.geo.ConfProj.subset"]], "subset() (pysurfex.geo.ign method)": [[9, "pysurfex.geo.IGN.subset"]], "subset() (pysurfex.geo.lonlatreg method)": [[9, "pysurfex.geo.LonLatReg.subset"]], "subset() (pysurfex.geo.lonlatval method)": [[9, "pysurfex.geo.LonLatVal.subset"]], "subset() (pysurfex.geo.surfexgeo method)": [[9, "pysurfex.geo.SurfexGeo.subset"]], "substitute() (pysurfex.binary_input.inputdatafromnamelist method)": [[9, "pysurfex.binary_input.InputDataFromNamelist.substitute"]], "substitute_string() (pysurfex.platform_deps.systemfilepaths static method)": [[9, "pysurfex.platform_deps.SystemFilePaths.substitute_string"]], "sum_neighbour_points() (in module pysurfex.interpolation)": [[9, "pysurfex.interpolation.sum_neighbour_points"]], "symlink_input() (pysurfex.file.surfexsurfio method)": [[9, "pysurfex.file.SurfexSurfIO.symlink_input"]], "td2rh() (pysurfex.bufr.bufrobservationset static method)": [[9, "pysurfex.bufr.BufrObservationSet.td2rh"]], "test() (pysurfex.titan.blacklist method)": [[9, "pysurfex.titan.Blacklist.test"]], "test() (pysurfex.titan.buddy method)": [[9, "pysurfex.titan.Buddy.test"]], "test() (pysurfex.titan.climatology method)": [[9, "pysurfex.titan.Climatology.test"]], "test() (pysurfex.titan.domaincheck method)": [[9, "pysurfex.titan.DomainCheck.test"]], "test() (pysurfex.titan.firstguess method)": [[9, "pysurfex.titan.FirstGuess.test"]], "test() (pysurfex.titan.fraction method)": [[9, "pysurfex.titan.Fraction.test"]], "test() (pysurfex.titan.nometa method)": 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\ No newline at end of file
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"pysurfex.forcing.NetCDFOutput.write_forcing"]], "write_forcing() (pysurfex.forcing.surfexoutputforcing method)": [[9, "pysurfex.forcing.SurfexOutputForcing.write_forcing"]], "write_formatted_array() (in module pysurfex.forcing)": [[9, "pysurfex.forcing.write_formatted_array"]], "write_json() (pysurfex.timeseries.timeseries method)": [[9, "pysurfex.timeseries.TimeSeries.write_json"]], "write_json_file() (pysurfex.obs.observationset method)": [[9, "pysurfex.obs.ObservationSet.write_json_file"]], "write_obsmon_sqlite_file() (in module pysurfex.obsmon)": [[9, "pysurfex.obsmon.write_obsmon_sqlite_file"]], "write_output() (pysurfex.titan.qcdataset method)": [[9, "pysurfex.titan.QCDataSet.write_output"]], "write_proj_info() (pysurfex.geo.geo method)": [[9, "pysurfex.geo.Geo.write_proj_info"]]}})
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