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subdivide abnormal feces composition MP:0003868 #3997

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sbello opened this issue Jun 17, 2024 · 4 comments
Open

subdivide abnormal feces composition MP:0003868 #3997

sbello opened this issue Jun 17, 2024 · 4 comments
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HPO mapping mapping of MP to HP terms new term request

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@sbello
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sbello commented Jun 17, 2024

abnormal feces composition MP:0003868 has only 2 child terms and many direct annotations, review the annotations to create new child terms

abnormal/increased/decreased feces lipid content - J:344868 - increase in free fatty acids
existing term steatorrhea would fall under this
@sbello sbello self-assigned this Jun 17, 2024
sbello added a commit that referenced this issue Jun 18, 2024
@sbello
working on #3997
1b2442b 
Added
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014475>))
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014476>))
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014477>))
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014478>))
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014479>))
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014480>))
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014481>))
sbello added a commit that referenced this issue Jun 18, 2024
@sbello
working on #3997
083de70 
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014482>))
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014483>))
Declaration(Class(<http://purl.obolibrary.org/obo/MP_0014484>))
@sbello
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sbello commented Jun 18, 2024

Added terms for lipids, cholesterol, bile salts and water content
Leaving this open until we make a decision about steatorrhea #3998

@sbello
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sbello commented Jun 18, 2024

the ELK reasoner puts abnormal feces water content under abnormal body water content but I don't think this is correct so I did not add the parent

sbello added a commit that referenced this issue Jun 18, 2024
@sbello
working on #3997
4cf630f 
added additional parents for cholesterol and lipid terms
@anna-anagnostop
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Also, how does diarrhea MP:0005036 (under 'abnormal defecation', CHECK EQ) relate to the new term increased feces water content MP:0014483 ?

Compare wih HPO term Diarrhea HP:0002014 which uses the same EQ as the MP term but has addtional child terms.

@sbello
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sbello commented Jun 21, 2024 •
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I've made diarrhea a child of increased feces water content, I wouldn't cal these the same since you may have more water than normal but not be fully diarrhea. But diarrhea clearly has as part an increase in water content.

We should discuss with Leigh the placement of 'melana' MP has this under feces composition but HPO has it under diarrhea

@sbello sbello added the HPO mapping mapping of MP to HP terms label Jun 21, 2024
sbello added a commit that referenced this issue Jun 21, 2024
@sbello
working on #3997
8c48f52 
adding parents
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