From 740acd7a5c8205c0a6da6d775120199f830440fb Mon Sep 17 00:00:00 2001
From: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: Thu, 5 Oct 2023 11:02:28 +0300
Subject: [PATCH] Fix vignette (#99)

* bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

* bump x.y.z version to odd y following creation of RELEASE_3_16 branch

* bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

* bump x.y.z version to odd y following creation of RELEASE_3_17 branch

* up

* up

* up

* up

* up

---------

Co-authored-by: J Wokaty <jennifer.wokaty@sph.cuny.edu>
Co-authored-by: J Wokaty <jwokaty@users.noreply.github.com>
---
 vignettes/miaViz.Rmd | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/vignettes/miaViz.Rmd b/vignettes/miaViz.Rmd
index 23debfc6..ef2b41b9 100644
--- a/vignettes/miaViz.Rmd
+++ b/vignettes/miaViz.Rmd
@@ -256,6 +256,15 @@ plotColGraph(altExp(GlobalPatterns,"Genus"),
 
 # Plotting of serial data
 
+```{r, eval=FALSE}
+if(!requireNamespace("devtools", quietly = TRUE)){
+    BiocManager::install("devtools")
+}
+if(!requireNamespace("miaTime", quietly = TRUE)){
+    devtools::install_github("microbiome/miaTime", upgrade = "never")
+}
+```
+
 ```{r, eval=FALSE}
 # Load data from miaTime package
 library("miaTime")
@@ -329,15 +338,6 @@ plotDMNFit(dmn_se, type = "laplace")
 
 # Serial data ordination and trajectories
 
-```{r, eval=FALSE}
-if(!requireNamespace("devtools", quietly = TRUE)){
-    BiocManager::install("devtools")
-}
-if(!requireNamespace("miaTime", quietly = TRUE)){
-    devtools::install_github("microbiome/miaTime", upgrade = "never")
-}
-```
-
 Principal Coordinates Analysis using Bray-Curtis dissimilarity on the
 `hitchip1006` dataset: