diff --git a/vignettes/miaViz.Rmd b/vignettes/miaViz.Rmd index 7a599d46..23debfc6 100644 --- a/vignettes/miaViz.Rmd +++ b/vignettes/miaViz.Rmd @@ -256,7 +256,7 @@ plotColGraph(altExp(GlobalPatterns,"Genus"), # Plotting of serial data -```{r} +```{r, eval=FALSE} # Load data from miaTime package library("miaTime") data(SilvermanAGutData, package="miaTime") @@ -271,7 +271,7 @@ descriptor for ordering the data. The `y` argument selects the feature to show. Since plotting a lot of features is not advised a maximum of 20 features can plotted at the same time. -```{r} +```{r, eval=FALSE} plotSeries(tse, x = "DAY_ORDER", y = taxa, @@ -281,7 +281,7 @@ If replicated data is present, data is automatically used for calculation of the `mean` and `sd` and plotted as a range. Data from different assays can be used for plotting via the `assay.type`. -```{r} +```{r, eval=FALSE} plotSeries(tse[taxa,], x = "DAY_ORDER", colour_by = "Family", @@ -291,7 +291,7 @@ plotSeries(tse[taxa,], Additional variables can be used to modify line type aesthetics. -```{r} +```{r, eval=FALSE} plotSeries(tse, x = "DAY_ORDER", y = getTopTaxa(tse, 5),