diff --git a/README.md b/README.md new file mode 100644 index 0000000..20cdced --- /dev/null +++ b/README.md @@ -0,0 +1,8 @@ +# LSDTM +LSDTM (Location-Specific Disease Transmission Models) related scripts + +### How to Run LSDTM +1. Clone or LSDTM project +2. Ensure fred/fred-phdl2.12.0-isg1.0 and fred_populations/spew2synthia-1.2.0 modules are available in working environment (module avail) +3. Determine population ID ('spew_1.2.0_mng' is the population ID for Mongolia in Synthia-formatted SPEW v1.2.0) +4. Run [path]/LSDTM/lsdtm.sh -p -o