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data_utils.py
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data_utils.py
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# Mikaela Uy ([email protected])
import os, sys
import json
import numpy as np
import h5py
import random
import trimesh
from PIL import Image
import importlib.util
import torch
import torch.nn.functional as F
import torchgeometry as tgm
BASE_DIR = os.path.dirname(os.path.abspath(__file__))
sys.path.append(BASE_DIR) # model
sys.path.append(os.path.join(BASE_DIR, '..','data_preprocessing'))
from global_variables import *
from utils import *
### For marching cube
from skimage import measure
import skimage
import plyfile, logging
import time
### For extent clustering
from sklearn.cluster import DBSCAN
from sklearn import metrics
TORCH_PI = torch.acos(torch.zeros(1)).item() * 2
def rotate_point_cloud_with_normal(batch_xyz, batch_normal):
''' Randomly rotate XYZ, normal point cloud.
'''
for k in range(batch_xyz.shape[0]):
rotation_angle = torch.rand(1) * 2 * TORCH_PI
cosval = torch.cos(rotation_angle)
sinval = torch.sin(rotation_angle)
rotation_matrix = torch.tensor([[cosval, 0., sinval],
[0., 1., 0.],
[-sinval, 0., cosval]])
shape_pc = batch_xyz[k,:,:]
shape_normal = batch_normal[k,:,:]
batch_xyz[k,:,:] = torch.matmul(shape_pc.view((-1, 3)), rotation_matrix)
batch_normal[k,:,:] = torch.matmul(shape_normal.view((-1, 3)), rotation_matrix)
return batch_xyz, batch_normal
def rotate_point_cloud_with_normal_discretized(batch_xyz, batch_normal):
''' Randomly rotate XYZ, normal point cloud.
'''
for k in range(batch_xyz.shape[0]):
## Randomly pick an axis
# 0:x, 1:y, 2:z
axis_selection = torch.randint(0, 3, (1,))
rotation_angle = torch.randint(0, 4, (1,)) * 0.5 * TORCH_PI
cosval = torch.cos(rotation_angle[0])
sinval = torch.sin(rotation_angle[0])
if axis_selection[0] == 0:
#x-axis
rotation_matrix = torch.tensor([[1., 0., 0.],
[0., cosval, -sinval],
[0., sinval, cosval]])
elif axis_selection[0] == 1:
rotation_matrix = torch.tensor([[cosval, 0., sinval],
[0., 1., 0.],
[-sinval, 0., cosval]])
else:
rotation_matrix = torch.tensor([[cosval, -sinval, 0.],
[sinval, cosval, 0.],
[0., 0., 1.]])
shape_pc = batch_xyz[k,:,:]
shape_normal = batch_normal[k,:,:]
batch_xyz[k,:,:] = torch.matmul(shape_pc.view((-1, 3)), rotation_matrix)
batch_normal[k,:,:] = torch.matmul(shape_normal.view((-1, 3)), rotation_matrix)
return batch_xyz, batch_normal
def add_noise(batch_xyz, batch_normal, sigma=0.01):
'''
Adds a random gaussian noise for each point in the direction of the normal
'''
# print("adding noise")
batch_size, num_points, _ = batch_xyz.shape
sampled_noise = np.random.normal(0.0, sigma, (batch_size, num_points))
sampled_noise = np.tile(np.expand_dims(sampled_noise, axis=-1), [1,1,3])
noisy_pc = batch_xyz + torch.tensor(sampled_noise)*batch_normal
return noisy_pc
def estimate_extrusion_axis(X, W_barrel, W_base, gt_bb_labels, gt_extrusion_instances, normalize=False):
'''
X : (batch_size, num_points, 3) predicted normals
W_barrel : (batch_size, num_points, K) segmentation prediction (even rows from W_2K)
W_base : (batch_size, num_points, K) segmentation prediction (odd rows from W_2K)
gt_bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
gt_extrusion_instances: (batch_size, num_points) labels for the K extrusion segments
'''
batch_size, num_points, K = W_barrel.shape
'''
for i = 0, 1, ..., K
Objective: min(BTB-CTC)
where BTB is the barrel matrix and CTC is the base matrix
Bx = 0, Cx = 1
B = diag(w_k_barrel)*X
C = diag(w_k_base)*X
'''
E_AX = torch.zeros((batch_size, K, 3)).to(W_base.device)
for i in range(K):
w_i_barrel = W_barrel[:,:,i]
w_i_base = W_base[:,:,i]
# print(w_i_barrel)
# print(w_i_barrel.shape)
# print(w_i_base.shape)
w_i_barrel = torch.diag_embed(w_i_barrel)
w_i_base = torch.diag_embed(w_i_base)
# print(w_i_barrel)
# print(w_i_barrel.shape)
# print(w_i_base.shape)
if normalize:
# Compute weights from gt number of points in base/barrel
ind_i = torch.where(gt_extrusion_instances==i, torch.tensor([1.0]).to(W_base.device), torch.tensor([0.0]).to(W_base.device))
ind_barrel = torch.where(gt_bb_labels==0, torch.tensor([1.0]).to(W_base.device), torch.tensor([0.0]).to(W_base.device))
ind_base = torch.where(gt_bb_labels==1, torch.tensor([1.0]).to(W_base.device), torch.tensor([0.0]).to(W_base.device))
ind_barrel_i = ind_i*ind_barrel
ind_base_i = ind_i*ind_base
norm_barrel = torch.sum(ind_barrel_i, dim=-1).unsqueeze(-1).unsqueeze(-1).repeat(1, num_points, 3) # (B, 4096, 3)
norm_base = torch.sum(ind_base_i, dim=-1).unsqueeze(-1).unsqueeze(-1).repeat(1, num_points, 3) # (B, 4096, 3)
norm_barrel = torch.sqrt(norm_barrel)
norm_base = torch.sqrt(norm_base)
# print(ind_i)
# print(ind_base)
# print(ind_base_i)
# print(ind_barrel_i.shape)
# print(ind_base_i.shape)
# print(norm_barrel.shape)
# print(norm_base.shape)
# print()
B = torch.bmm(w_i_barrel, X)
C = torch.bmm(w_i_base, X)
if normalize:
B = torch.div(B, norm_barrel+1.0)
C = torch.div(C, norm_base+1.0)
BTB = torch.bmm(torch.transpose(B, 1, 2), B)
CTC = torch.bmm(torch.transpose(C, 1, 2), C)
# print(B.shape)
# print(C.shape)
# print(BTB.shape)
# print(CTC.shape)
e, v = torch.symeig(BTB-CTC, eigenvectors=True)
ax = v[:,:,0]
E_AX[:, i, :] = ax
# print(e[0])
# print(v[0])
return E_AX
def estimate_extrusion_axis_seperate(X, W_bb, W_seg, gt_bb_labels, gt_extrusion_instances, normalize=False):
'''
X: (batch_size, num_points, 3) predicted normals
W_bb: (batch_size, num_points, 2) 0th col for barrel, 1st col for base
W_seg: (batch_size, num_points, K) segmentation prediction
gt_bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
gt_extrusion_instances: (batch_size, num_points) labels for the K extrusion segments
'''
batch_size, num_points, K = W_seg.shape
W_barrel = W_seg * W_bb[:, :, 0].unsqueeze(-1).repeat(1, 1, K)
W_base = W_seg * W_bb[:, :, 1].unsqueeze(-1).repeat(1, 1, K)
E_AX = torch.zeros((batch_size, K, 3)).to(W_seg.device)
for i in range(K):
w_i_barrel = W_barrel[:,:,i]
w_i_base = W_base[:,:,i]
# print(w_i_barrel)
# print(w_i_barrel.shape)
# print(w_i_base.shape)
w_i_barrel = torch.diag_embed(w_i_barrel)
w_i_base = torch.diag_embed(w_i_base)
# print(w_i_barrel)
# print(w_i_barrel.shape)
# print(w_i_base.shape)
if normalize:
# Compute weights from gt number of points in base/barrel
ind_i = torch.where(gt_extrusion_instances==i, torch.tensor([1.0]).to(W_base.device), torch.tensor([0.0]).to(W_base.device))
ind_barrel = torch.where(gt_bb_labels==0, torch.tensor([1.0]).to(W_base.device), torch.tensor([0.0]).to(W_base.device))
ind_base = torch.where(gt_bb_labels==1, torch.tensor([1.0]).to(W_base.device), torch.tensor([0.0]).to(W_base.device))
ind_barrel_i = ind_i*ind_barrel
ind_base_i = ind_i*ind_base
norm_barrel = torch.sum(ind_barrel_i, dim=-1).unsqueeze(-1).unsqueeze(-1).repeat(1, num_points, 3) # (B, 4096, 3)
norm_base = torch.sum(ind_base_i, dim=-1).unsqueeze(-1).unsqueeze(-1).repeat(1, num_points, 3) # (B, 4096, 3)
norm_barrel = torch.sqrt(norm_barrel)
norm_base = torch.sqrt(norm_base)
# print(ind_i)
# print(ind_base)
# print(ind_base_i)
# print(ind_barrel_i.shape)
# print(ind_base_i.shape)
# print(norm_barrel.shape)
# print(norm_base.shape)
# print()
B = torch.bmm(w_i_barrel, X)
C = torch.bmm(w_i_base, X)
if normalize:
B = torch.div(B, norm_barrel+1.0)
C = torch.div(C, norm_base+1.0)
BTB = torch.bmm(torch.transpose(B, 1, 2), B)
CTC = torch.bmm(torch.transpose(C, 1, 2), C)
# print(B.shape)
# print(C.shape)
# print(BTB.shape)
# print(CTC.shape)
e, v = torch.symeig(BTB-CTC, eigenvectors=True)
ax = v[:,:,0]
E_AX[:, i, :] = ax
# print(e[0])
# print(v[0])
return E_AX
def estimate_extrusion_centers(W, pcs):
## Input: W (B, N, K), pcs (B, N, 3)
## Output: pred_centers (B, K, 3)
batch_size, num_points, K = W.shape
W = W.permute(0, 2, 1)
W_reshaped = W.unsqueeze(-1).repeat(1,1,1,3)
pcs_reshaped = pcs.unsqueeze(1).repeat(1,K,1,1)
weighted_pcs = W_reshaped * pcs_reshaped #(B, K, N, 3)
pred_centers = weighted_pcs.mean(dim=-2)
return pred_centers
def sketch_projection(P, W, W_barrel, extrusion_axes, gt_bb_labels, gt_extrusion_instances, use_gt_seg = True, use_gt_bb = True):
'''
P : (batch_size, num_points, 3) input point cloud
W: (batch_size, num_points, K) extrusion segmentation prediction (combined every two rows of W_2K)
W_barrel : (batch_size, num_points, K) segmentation prediction (even rows from W_2K)
extrusion_axes : (batch_size, K, 3) extrusion axis to project to
gt_bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
gt_extrusion_instances: (batch_size, num_points) labels for the K extrusion segments
'''
batch_size, num_points, K = W.shape
gt_exlabel_ = gt_extrusion_instances.view(-1)
gt_EA_W = F.one_hot(gt_exlabel_, num_classes=K)
gt_EA_W = gt_EA_W.view(batch_size, num_points, K)
gt_bb_labels_ = gt_bb_labels.unsqueeze(-1).repeat(1,1,K)
gt_W_b = torch.where(gt_bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
## Project barrel points on each segment
if use_gt_bb and use_gt_seg:
W_b = torch.where(gt_bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
elif use_gt_bb and (not use_gt_seg):
W_b = torch.where(gt_bb_labels_==0, W.float(), torch.tensor([0.0]).to(W.device))
else:
W_b = W_barrel
P_projected = torch.zeros((K, batch_size, num_points, 3)).to(P.device)
for i in range(K):
ax = extrusion_axes[:, i, :]
# Compute centroid
w_i_gt = gt_W_b[:,:,i]
w_i_diag_gt = torch.diag_embed(w_i_gt)
centroid = torch.mean(torch.bmm(w_i_diag_gt, P), dim=1)
centroid = centroid.unsqueeze(1).repeat(1, num_points, 1)
'''
# Make centroid the origin of the plane
v = point - centroid
# Get distance from point to plane
dist = dot(v, extrusion_axis
# Get projection
proj = point - dist*extrusion_axis
'''
# w_i = EA_W[:,:,i].float()
# w_i_diag = torch.diag_embed(w_i)
w_i = W_b[:,:,i]
w_i_diag = torch.diag_embed(w_i)
points_in_segment = torch.bmm(w_i_diag, P)
points_centered = torch.bmm(w_i_diag, points_in_segment - centroid)
ax_expanded = ax.unsqueeze(1).repeat(1, num_points, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_points, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = torch.bmm(w_i_diag, points_in_segment - delta)
P_projected[i, :, :, :] = points_projected
return P_projected
def sketch_projection_v2(P, W, W_barrel, extrusion_axes, gt_bb_labels, gt_extrusion_instances, use_gt_seg = True, use_gt_bb = True):
'''
P : (batch_size, num_points, 3) input point cloud
W: (batch_size, num_points, K) extrusion segmentation prediction (combined every two rows of W_2K)
W_barrel : (batch_size, num_points, K) segmentation prediction (even rows from W_2K)
extrusion_axes : (batch_size, K, 3) extrusion axis to project to
gt_bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
gt_extrusion_instances: (batch_size, num_points) labels for the K extrusion segments
'''
batch_size, num_points, K = W.shape
gt_exlabel_ = gt_extrusion_instances.view(-1)
gt_EA_W = F.one_hot(gt_exlabel_, num_classes=K)
gt_EA_W = gt_EA_W.view(batch_size, num_points, K)
gt_bb_labels_ = gt_bb_labels.unsqueeze(-1).repeat(1,1,K)
gt_W_b = torch.where(gt_bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
## Project barrel points on each segment
if use_gt_bb and use_gt_seg:
W_b = torch.where(gt_bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
elif use_gt_bb and (not use_gt_seg):
W_b = torch.where(gt_bb_labels_==0, W.float(), torch.tensor([0.0]).to(W.device))
else:
W_b = W_barrel
P_projected = torch.zeros((K, batch_size, num_points, 3)).to(P.device)
for i in range(K):
ax = extrusion_axes[:, i, :]
# Compute centroid
w_i_gt = gt_W_b[:,:,i]
w_i_diag_gt = torch.diag_embed(w_i_gt)
## Corrected centroid calculation
points_in_segment_gt = torch.bmm(w_i_diag_gt, P)
pt_norm = (torch.square(points_in_segment_gt).sum(-1) != 0).sum(dim=-1) # count number of points in segment
pt_norm = pt_norm.unsqueeze(-1).repeat(1,3)
sum_pts = torch.sum(points_in_segment_gt, dim=1)
centroid = torch.div(sum_pts, pt_norm+g_zero_tol)
centroid = centroid.unsqueeze(1).repeat(1, num_points, 1)
'''
# Make centroid the origin of the plane
v = point - centroid
# Get distance from point to plane
dist = dot(v, extrusion_axis
# Get projection
proj = point - dist*extrusion_axis
'''
# w_i = EA_W[:,:,i].float()
# w_i_diag = torch.diag_embed(w_i)
w_i = W_b[:,:,i]
w_i_diag = torch.diag_embed(w_i)
points_in_segment = torch.bmm(w_i_diag, P)
points_centered = torch.bmm(w_i_diag, points_in_segment - centroid)
ax_expanded = ax.unsqueeze(1).repeat(1, num_points, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_points, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = torch.bmm(w_i_diag, points_in_segment - delta)
P_projected[i, :, :, :] = points_projected
return P_projected
def sketch_projection_v3(P, extrusion_axes, gt_bb_labels, gt_extrusion_instances):
'''
P : (batch_size, num_points, 3) input point cloud
W: (batch_size, num_points, K) extrusion segmentation prediction (combined every two rows of W_2K)
W_barrel : (batch_size, num_points, K) segmentation prediction (even rows from W_2K)
extrusion_axes : (batch_size, K, 3) extrusion axis to project to
gt_bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
gt_extrusion_instances: (batch_size, num_points) labels for the K extrusion segments
'''
batch_size, K, _ = extrusion_axes.shape
num_points = P.shape[1]
gt_exlabel_ = gt_extrusion_instances.view(-1)
gt_EA_W = F.one_hot(gt_exlabel_, num_classes=K)
gt_EA_W = gt_EA_W.view(batch_size, num_points, K)
# Get barrel points
gt_bb_labels_ = gt_bb_labels.unsqueeze(-1).repeat(1,1,K)
gt_W_b = torch.where(gt_bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
P_projected = torch.zeros((K, batch_size, num_points, 3)).to(P.device)
for i in range(K):
ax = extrusion_axes[:, i, :]
# Compute centroid
w_i_gt = gt_W_b[:,:,i]
w_i_diag_gt = torch.diag_embed(w_i_gt)
## Corrected centroid calculation
points_in_segment_gt = torch.bmm(w_i_diag_gt, P)
pt_norm = (torch.square(points_in_segment_gt).sum(-1) != 0).sum(dim=-1) # count number of points in segment
pt_norm = pt_norm.unsqueeze(-1).repeat(1,3)
sum_pts = torch.sum(points_in_segment_gt, dim=1)
centroid = torch.div(sum_pts, pt_norm+g_zero_tol)
centroid = centroid.unsqueeze(1).repeat(1, num_points, 1)
'''
# Make centroid the origin of the plane
v = point - centroid
# Get distance from point to plane
dist = dot(v, extrusion_axis
# Get projection
proj = point - dist*extrusion_axis
'''
points_centered = P - centroid
ax_expanded = ax.unsqueeze(1).repeat(1, num_points, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_points, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = P - delta
P_projected[i, :, :, :] = points_projected
return P_projected
def gt_axis_sketch_projection(P, extrusion_axes, gt_bb_labels, gt_extrusion_instances, extrusion_centers, num_gt_points_to_sample=512):
'''
P : (batch_size, num_points, 3) input point cloud
W: (batch_size, num_points, K) extrusion segmentation prediction (combined every two rows of W_2K)
W_barrel : (batch_size, num_points, K) segmentation prediction (even rows from W_2K)
extrusion_axes : (batch_size, K, 3) extrusion axis to project to
gt_bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
gt_extrusion_instances: (batch_size, num_points) labels for the K extrusion segments
'''
batch_size, K, _ = extrusion_axes.shape
num_points = P.shape[1]
gt_exlabel_ = gt_extrusion_instances.view(-1)
gt_EA_W = F.one_hot(gt_exlabel_, num_classes=K)
gt_EA_W = gt_EA_W.view(batch_size, num_points, K)
# Get barrel points
gt_bb_labels_ = gt_bb_labels.unsqueeze(-1).repeat(1,1,K)
gt_W_b = torch.where(gt_bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
P_projected = torch.zeros((K, batch_size, num_points, 3)).to(P.device)
P_soft_projected = torch.zeros((K, batch_size, num_points, 3)).to(P.device)
gt_projected = torch.zeros((K, batch_size, num_gt_points_to_sample, 3)).to(P.device)
## Project all points onto plane defined by gt axis and center
for i in range(K):
ax = extrusion_axes[:, i, :]
centroid = extrusion_centers[:, i, :]
centroid_p = centroid.unsqueeze(1).repeat(1, num_points, 1)
'''
# Make centroid the origin of the plane
v = point - centroid
# Get distance from point to plane
dist = dot(v, extrusion_axis
# Get projection
proj = point - dist*extrusion_axis
'''
###### For predicted segments
points_centered = P - centroid_p
ax_expanded = ax.unsqueeze(1).repeat(1, num_points, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_points, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = P - delta
P_projected[i, :, :, :] = points_projected
###############
###### For ground truth
curr_segment_mask = gt_W_b[:,:,i]
indices = curr_segment_mask==1
indices = indices.nonzero().squeeze()
# print(indices)
# print(indices.shape)
batch_gt_unprojected = torch.zeros((batch_size, num_gt_points_to_sample, 3)).to(P.device)
for j in range(batch_size):
curr_sample_indices = indices[:,0]==j
curr_sample_indices = curr_sample_indices.nonzero().squeeze()
# print(curr_sample_indices)
if (curr_sample_indices.shape[0]==0):
batch_gt_unprojected[j, :, :] = torch.zeros((num_gt_points_to_sample, 3)).to(P.device)
continue
curr_sample_pt_idx = indices[:,1][curr_sample_indices]
# print(curr_sample_pt_idx)
# Random sampling from gt barrel points
rand_idx = torch.randint(0, curr_sample_pt_idx.shape[0], (num_gt_points_to_sample,))
sampled_idx = curr_sample_pt_idx[rand_idx]
# print(sampled_idx)
# print(P[j,:,:].shape)
sampled_gt_segment_pc = torch.gather(P[j,:,:], 0, sampled_idx.unsqueeze(-1).repeat(1,3))
# print(sampled_gt_segment_pc.shape)
batch_gt_unprojected[j, :, :] = sampled_gt_segment_pc
centroid_g = centroid.unsqueeze(1).repeat(1, num_gt_points_to_sample, 1)
points_centered = batch_gt_unprojected - centroid_g
ax_expanded = ax.unsqueeze(1).repeat(1, num_gt_points_to_sample, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_gt_points_to_sample, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = batch_gt_unprojected - delta
gt_projected[i, :, :, :] = points_projected
##################
return P_projected, gt_projected
def gt_axis_sketch_projection_v2(P, W_barrel, extrusion_axes, gt_bb_labels, gt_extrusion_instances, extrusion_centers, num_gt_points_to_sample=512, num_soft_points_to_sample=512):
'''
P : (batch_size, num_points, 3) input point cloud
W: (batch_size, num_points, K) extrusion segmentation prediction (combined every two rows of W_2K)
W_barrel : (batch_size, num_points, K) segmentation prediction (even rows from W_2K)
extrusion_axes : (batch_size, K, 3) extrusion axis to project to
gt_bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
gt_extrusion_instances: (batch_size, num_points) labels for the K extrusion segments
'''
batch_size, K, _ = extrusion_axes.shape
num_points = P.shape[1]
gt_exlabel_ = gt_extrusion_instances.view(-1)
gt_EA_W = F.one_hot(gt_exlabel_, num_classes=K)
gt_EA_W = gt_EA_W.view(batch_size, num_points, K)
# Get barrel points
gt_bb_labels_ = gt_bb_labels.unsqueeze(-1).repeat(1,1,K)
gt_W_b = torch.where(gt_bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
P_projected = torch.zeros((K, batch_size, num_points, 3)).to(P.device)
P_soft_projected = torch.zeros((K, batch_size, num_soft_points_to_sample, 3)).to(P.device)
gt_projected = torch.zeros((K, batch_size, num_gt_points_to_sample, 3)).to(P.device)
## Project all points onto plane defined by gt axis and center
for i in range(K):
ax = extrusion_axes[:, i, :]
centroid = extrusion_centers[:, i, :]
centroid_p = centroid.unsqueeze(1).repeat(1, num_points, 1)
###### For predicted segments
points_centered = P - centroid_p
ax_expanded = ax.unsqueeze(1).repeat(1, num_points, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_points, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = P - delta
P_projected[i, :, :, :] = points_projected
###############
curr_segment_gt_mask = gt_W_b[:,:,i]
indices = curr_segment_gt_mask==1
indices = indices.nonzero().squeeze()
curr_segment_pred_mask = W_barrel[:,:,i]
indices_pred = curr_segment_pred_mask>=0.3
indices_pred = indices_pred.nonzero()
# print(curr_segment_pred_mask)
# print(indices_pred.shape)
# print(curr_segment_pred_mask.shape)
# print(indices)
# print(indices.shape)
batch_gt_unprojected = torch.zeros((batch_size, num_gt_points_to_sample, 3)).to(P.device)
batch_pred_unprojected = torch.zeros((batch_size, num_soft_points_to_sample, 3)).to(P.device)
for j in range(batch_size):
## For gt
curr_sample_indices = indices[:,0]==j
if (curr_sample_indices.nonzero().shape[0]<=1):
batch_gt_unprojected[j, :, :] = torch.zeros((num_gt_points_to_sample, 3)).to(P.device)
continue
curr_sample_indices = curr_sample_indices.nonzero().squeeze()
# print(curr_sample_indices)
if (curr_sample_indices.shape[0]==0):
batch_gt_unprojected[j, :, :] = torch.zeros((num_gt_points_to_sample, 3)).to(P.device)
continue
curr_sample_pt_idx = indices[:,1][curr_sample_indices]
# print(curr_sample_pt_idx)
# Random sampling from gt barrel points
rand_idx = torch.randint(0, curr_sample_pt_idx.shape[0], (num_gt_points_to_sample,))
sampled_idx = curr_sample_pt_idx[rand_idx]
# print(sampled_idx)
# print(P[j,:,:].shape)
sampled_gt_segment_pc = torch.gather(P[j,:,:], 0, sampled_idx.unsqueeze(-1).repeat(1,3))
# print(sampled_gt_segment_pc.shape)
batch_gt_unprojected[j, :, :] = sampled_gt_segment_pc
## For soft pred
curr_sample_indices = indices_pred[:,0]==j
if (curr_sample_indices.nonzero().shape[0]<=1):
batch_pred_unprojected[j, :, :] = torch.zeros((num_soft_points_to_sample, 3)).to(P.device)
continue
curr_sample_indices = curr_sample_indices.nonzero().squeeze()
# print(curr_sample_indices)
# print()
if (curr_sample_indices.shape[0]==0):
batch_pred_unprojected[j, :, :] = torch.zeros((num_soft_points_to_sample, 3)).to(P.device)
continue
curr_sample_pt_idx = indices_pred[:,1][curr_sample_indices]
# print(curr_sample_pt_idx)
# Random sampling from gt barrel points
rand_idx = torch.randint(0, curr_sample_pt_idx.shape[0], (num_soft_points_to_sample,))
sampled_idx = curr_sample_pt_idx[rand_idx]
# print(sampled_idx)
# print(P[j,:,:].shape)
sampled_gt_segment_pc = torch.gather(P[j,:,:], 0, sampled_idx.unsqueeze(-1).repeat(1,3))
# print(sampled_gt_segment_pc.shape)
batch_pred_unprojected[j, :, :] = sampled_gt_segment_pc
'''
# Make centroid the origin of the plane
v = point - centroid
# Get distance from point to plane
dist = dot(v, extrusion_axis
# Get projection
proj = point - dist*extrusion_axis
'''
centroid_g = centroid.unsqueeze(1).repeat(1, num_gt_points_to_sample, 1)
points_centered = batch_gt_unprojected - centroid_g
ax_expanded = ax.unsqueeze(1).repeat(1, num_gt_points_to_sample, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_gt_points_to_sample, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = batch_gt_unprojected - delta
gt_projected[i, :, :, :] = points_projected
centroid_p = centroid.unsqueeze(1).repeat(1, num_soft_points_to_sample, 1)
points_centered = batch_pred_unprojected - centroid_p
ax_expanded = ax.unsqueeze(1).repeat(1, num_soft_points_to_sample, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_soft_points_to_sample, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = batch_pred_unprojected - delta
P_soft_projected[i, :, :, :] = points_projected
###############
return P_projected, gt_projected, P_soft_projected
### For evaluation
def sketch_projection_evaluation(P, seg_label, bb_labels, extrusion_axes, extrusion_centers, num_points_to_sample=1024):
'''
P : (batch_size, num_points, 3) input point cloud
seg_label: (batch_size, num_points) extrusion segmentation label
extrusion_axes : (batch_size, K, 3) extrusion axis to project to
extrusion_centers : (batch_size, K, 3) extrusion segment centers
bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
num_points_to_sample: num points to sample
'''
batch_size, K, _ = extrusion_axes.shape
num_points = P.shape[1]
exlabel_ = seg_label.view(-1)
gt_EA_W = F.one_hot(exlabel_, num_classes=K)
gt_EA_W = gt_EA_W.view(batch_size, num_points, K)
# Get barrel points
bb_labels_ = bb_labels.unsqueeze(-1).repeat(1,1,K)
gt_W_b = torch.where(bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
P_projected = torch.zeros((K, batch_size, num_points_to_sample, 3)).to(P.device)
found_centers_mask = torch.zeros((batch_size, K)).to(gt_EA_W.device)
## Project all points onto plane defined by gt axis and center
for i in range(K):
ax = extrusion_axes[:, i, :]
centroid = extrusion_centers[:, i, :]
curr_segment_gt_mask = gt_W_b[:,:,i]
indices = curr_segment_gt_mask==1
if (indices.nonzero().shape[0]<=1):
found_centers_mask[:,i] = 0.0
continue
indices = indices.nonzero().squeeze()
batch_projected = torch.zeros((batch_size, num_points_to_sample, 3)).to(P.device)
for j in range(batch_size):
## For gt
curr_sample_indices = indices[:,0]==j
## No points found in segment (1 point found is considered no points to handle .squeeze() function)
if (curr_sample_indices.nonzero().shape[0]<=1):
found_centers_mask[j,i] = 0.0
continue
curr_sample_indices = curr_sample_indices.nonzero().squeeze()
curr_sample_pt_idx = indices[:,1][curr_sample_indices]
# Random sampling from gt barrel points
rand_idx = torch.randint(0, curr_sample_pt_idx.shape[0], (num_points_to_sample,))
sampled_idx = curr_sample_pt_idx[rand_idx]
sampled_gt_segment_pc = torch.gather(P[j,:,:], 0, sampled_idx.unsqueeze(-1).repeat(1,3))
batch_projected[j, :, :] = sampled_gt_segment_pc
found_centers_mask[j, i] = 1.0
'''
# Make centroid the origin of the plane
v = point - centroid
# Get distance from point to plane
dist = dot(v, extrusion_axis
# Get projection
proj = point - dist*extrusion_axis
'''
centroid_g = centroid.unsqueeze(1).repeat(1, num_points_to_sample, 1)
points_centered = batch_projected - centroid_g
ax_expanded = ax.unsqueeze(1).repeat(1, num_points_to_sample, 1) # (B, N, 3)
points_centered = points_centered.view(-1,3) # (B*N, 3)
ax_expanded_collapsed = ax_expanded.view(-1,3) # (B*N, 3)
points_centered = points_centered.unsqueeze(1) #(B*N, 1, 3)
ax_expanded_collapsed = ax_expanded_collapsed.unsqueeze(2) #(B*N, 3, 1)
dist = torch.bmm(points_centered, ax_expanded_collapsed)
dist = dist.view(-1, num_points_to_sample, 1)
delta = dist.repeat(1,1,3) * ax_expanded
## project all points
points_projected = batch_projected - delta
P_projected[i, :, :, :] = points_projected
###############
return P_projected, found_centers_mask
def sketch_projection_evaluation_2d(P, seg_label, bb_labels, extrusion_axes, extrusion_centers, num_points_to_sample=1024):
'''
P : (batch_size, num_points, 3) input point cloud
seg_label: (batch_size, num_points) extrusion segmentation label
extrusion_axes : (batch_size, K, 3) extrusion axis to project to
extrusion_centers : (batch_size, K, 3) extrusion segment centers
bb_labels: (batch_size, num_points) 0 for barrel, 1 for base
num_points_to_sample: num points to sample
'''
batch_size, K, _ = extrusion_axes.shape
num_points = P.shape[1]
exlabel_ = seg_label.view(-1)
gt_EA_W = F.one_hot(exlabel_, num_classes=K)
gt_EA_W = gt_EA_W.view(batch_size, num_points, K)
# Get barrel points
bb_labels_ = bb_labels.unsqueeze(-1).repeat(1,1,K)
gt_W_b = torch.where(bb_labels_==0, gt_EA_W.float(), torch.tensor([0.0]).to(gt_EA_W.device))
P_projected = torch.zeros((K, batch_size, num_points_to_sample, 2)).to(P.device)
found_centers_mask = torch.zeros((batch_size, K)).to(gt_EA_W.device)
scales = torch.ones((K, batch_size)).to(gt_EA_W.device)
## Project all points onto plane defined by gt axis and center
for i in range(K):
ax = extrusion_axes[:, i, :]
centroid = extrusion_centers[:, i, :]
curr_segment_gt_mask = gt_W_b[:,:,i]
indices = curr_segment_gt_mask==1
if (indices.nonzero().shape[0]<=1):
found_centers_mask[:,i] = 0.0
continue
indices = indices.nonzero().squeeze()
batch_projected = torch.zeros((batch_size, num_points_to_sample, 3)).to(P.device)
## Find segments to project
for j in range(batch_size):
## For gt
curr_sample_indices = indices[:,0]==j
## No points found in segment (1 point found is considered no points to handle .squeeze() function)
if (curr_sample_indices.nonzero().shape[0]<=1):
found_centers_mask[j,i] = 0.0
continue
curr_sample_indices = curr_sample_indices.nonzero().squeeze()
curr_sample_pt_idx = indices[:,1][curr_sample_indices]
# Random sampling from gt barrel points
rand_idx = torch.randint(0, curr_sample_pt_idx.shape[0], (num_points_to_sample,))
sampled_idx = curr_sample_pt_idx[rand_idx]
sampled_gt_segment_pc = torch.gather(P[j,:,:], 0, sampled_idx.unsqueeze(-1).repeat(1,3))
batch_projected[j, :, :] = sampled_gt_segment_pc
found_centers_mask[j, i] = 1.0
## Debug
# curr_barrel_pc = batch_projected.to("cpu").detach().numpy()
# # curr_barrel_pc = np.array([curr_barrel_pc[7, :, 0], curr_barrel_pc[7, :, 1], np.zeros(curr_barrel_pc.shape[1])])
# print(curr_barrel_pc.shape)
# pcd = o3d.geometry.PointCloud()
# pcd.points = o3d.utility.Vector3dVector(curr_barrel_pc[0])
# o3d.io.write_point_cloud("unprojected.ply", pcd)
########
'''
Rotate extrusion axis to align with z axis
Project to 2D coordinate by removing the z-value
'''
## angle between ext_axis and z-axis
Z_AXIS = torch.from_numpy(np.array([0.0, 0.0, 1.0])).unsqueeze(0).repeat(batch_size,1).to(P.device).float()
dot_product = torch.bmm(ax.unsqueeze(1), Z_AXIS.unsqueeze(-1))
angles = torch.acos(dot_product).squeeze(-1).squeeze(-1)
rotation_matrices = torch.eye(3).to(P.device).float().reshape(1,3,3).repeat(batch_size, 1, 1)
## Get rotation matrices for non-zero angles
for a in range(batch_size):
angle = angles[a]
if angle > g_zero_tol:
rot_axis = torch.cross(ax[a], Z_AXIS[a])
rot_matrix = tgm.angle_axis_to_rotation_matrix((rot_axis * angle).unsqueeze(0))
rotation_matrices[a, :, :] = rot_matrix[0, :3, :3]
rotation_matrices_expanded = rotation_matrices.unsqueeze(1).repeat(1, num_points_to_sample, 1, 1).view(-1,3,3)
points_to_project = batch_projected.view(-1,3).unsqueeze(1)
points_projected = torch.bmm(points_to_project, rotation_matrices_expanded).squeeze()[:, :2].reshape(batch_size, num_points_to_sample, 2)
### Debug ###
# curr_barrel_pc = points_projected.to("cpu").detach().numpy()
# curr_barrel_pc = np.array([curr_barrel_pc[0, :, 0], curr_barrel_pc[0, :, 1], np.zeros(curr_barrel_pc.shape[1])])
# print(curr_barrel_pc.shape)
# pcd = o3d.geometry.PointCloud()
# pcd.points = o3d.utility.Vector3dVector(curr_barrel_pc.T)
# o3d.io.write_point_cloud("projected.ply", pcd)
#########
## Center sketch
# print(centroid.shape)
# print(rotation_matrices.shape)
# print()
centroid_projected = torch.bmm(centroid.unsqueeze(1), rotation_matrices).squeeze(1)[:, :2].unsqueeze(1)
# print(centroid_projected.shape)
# print(points_projected.shape)
points_projected -= centroid_projected
# print(points_projected.shape)
# exit()