index.md

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splash	overlay_color overlay_filter overlay_image actions #000 0.5 /assets/images/pcabanner.png label url Github Repo https://github.com/mlerotic/spectromicroscopy	Free and open source cross-platform tool developed in Python for spectromicroscopy data analysis.	image_path title excerpt url btn_label btn_class Features Integrated data converter.<br/> Data preprocessing: alignment, normalization...<br/> Principal component analysis (PCA).<br/> Cluster analysis for classifying pixels according to spectral similarity.<br/> SVD for composition map calculation.<br/> Peak identifier and Xray peak fitting.<br/> NNMA analysis.<br/> Tomographic reconstruction with Compressed Sensing. https://docs.spectromicroscopy.com/ Documentation btn--primary image_path title excerpt Download Mantis is available via PyPi!<br> [https://pypi.org/project/mantis-xray/](https://pypi.org/project/mantis-xray/)<br><br> Older versions are available as binaries:<br> Windows<br> [mantis-2.3.02.amd64.exe](https://github.com/mlerotic/spectromicroscopy/releases/download/2.3.02/mantis-2.3.02.amd64.exe)<br> [mantis-2.3.02.win32.exe](https://github.com/mlerotic/spectromicroscopy/releases/download/2.3.02/mantis-2.3.02.win32.exe)<br> Mac OS<br> [mantis-2.3.02-10.11.ElCapitan-x86_64.app.zip](https://github.com/mlerotic/spectromicroscopy/releases/download/2.3.02/mantis-2.3.02-10.11.ElCapitan-x86_64.app.zip)<br> [mantis-2.3.02-10.10.Yosemite-x86_64.app.zip](https://github.com/mlerotic/spectromicroscopy/releases/download/2.3.02/mantis-2.3.02-10.10.Yosemite-x86_64.app.zip)<br> [mantis-2.3.02-10.9.Maverics-x86_64.app.zip](https://github.com/mlerotic/spectromicroscopy/releases/download/2.3.02/mantis-2.3.02-10.9.Maverics-x86_64.app.zip)<br> [mantis-2.3.02-10.8.MtnLion-x86_64.app.zip](https://github.com/mlerotic/spectromicroscopy/releases/download/2.3.02/mantis-2.3.02-10.8.MntLion-x86_64.app.zip)<br> GNU/Linux<br> [mantis-2.3.02-x86_64](https://github.com/mlerotic/spectromicroscopy/releases/download/2.3.02/mantis-2.3.02.x86_64)<br> [mantis-2.3.02-i386](https://github.com/mlerotic/spectromicroscopy/releases/download/2.3.02/mantis-2.3.02-i386) image_path title excerpt url btn_label btn_class Code Repository New Python 3 version of Mantis is available on Github. https://github.com/mlerotic/spectromicroscopy Mantis on Github btn--primary

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About

MANTiS was developed by 2nd Look Consulting with the support from Argonne National Laboratory, The Advanced Photon Source, Diamond Light Source and McMaster University and contributions from Benjamin Watts (Paul Scherrer Institute) and Jan-David Förster (Max Planck Institute for Chemistry).

References

[1] Lerotic M, Mak R, Wirick S, Meirer F, Jacobsen C. MANTiS: a program for the analysis of X-ray spectromicroscopy data. J. Synchrotron Rad. 2014 Sep; 21(5); 1206–1212
[2] Mak R, Lerotic M, Fleckenstein H, Vogt S, Wild SM, Leyffer S, Sheynkin Y, Jacobsen C. Non-Negative Matrix Analysis for Effective Feature Extraction in X-Ray Spectromicroscopy. Faraday Discussions. 2014 Apr; 171
[3] Lerotic M, Jacobsen C, Gillow JB, Francis AJ, Wirick S, Vogt S, Maser J. Cluster analysis in soft X-ray spectromicroscopy: Finding the patterns in complex specimens. Journal of Electron Spectroscopy and Related Phenomena. 2005 Jun; 144–147, p:1137-1143
[4] Lerotic M, Jacobsen C, Schäfer T, Vogt S. Cluster analysis of soft X-ray spectromicroscopy data. Ultramicroscopy. 2004 Jul; 100(1–2), p:35-57