From a540cf21d6e23b1b86c77e3212863ca61f0cf8f5 Mon Sep 17 00:00:00 2001
From: Christian Tischer <christian.tischer@embl.de>
Date: Tue, 23 Jul 2024 14:43:18 +0200
Subject: [PATCH] Version bump

---
 pom.xml                                             |  2 +-
 .../BacteriaHaloQuantification.java                 | 13 +++++--------
 src/test/resources/collections/blobs-grid-table.txt |  5 +++++
 3 files changed, 11 insertions(+), 9 deletions(-)
 create mode 100644 src/test/resources/collections/blobs-grid-table.txt

diff --git a/pom.xml b/pom.xml
index d45f358c..2600be0f 100644
--- a/pom.xml
+++ b/pom.xml
@@ -9,7 +9,7 @@
 
     <groupId>org.embl.mobie</groupId>
     <artifactId>mobie-viewer-fiji</artifactId>
-    <version>5.3.2-SNAPSHOT</version>
+    <version>5.3.4-SNAPSHOT</version>
 
     <!-- mvn clean install -Dmaven.test.skip=true -Dscijava.app.directory=/Users/tischer/Desktop/Fiji/Fiji-MoBIE.app -->
 
diff --git a/src/test/java/projects/bacteria_halo_quantification/BacteriaHaloQuantification.java b/src/test/java/projects/bacteria_halo_quantification/BacteriaHaloQuantification.java
index f413f1d6..0daf433b 100644
--- a/src/test/java/projects/bacteria_halo_quantification/BacteriaHaloQuantification.java
+++ b/src/test/java/projects/bacteria_halo_quantification/BacteriaHaloQuantification.java
@@ -1,6 +1,7 @@
 package projects.bacteria_halo_quantification;
 
 import net.imagej.ImageJ;
+import org.embl.mobie.command.open.OpenImageAndLabelsCommand;
 import org.embl.mobie.command.open.OpenMultipleImagesAndLabelsCommand;
 
 import java.io.File;
@@ -11,15 +12,11 @@ public static void main( String[] args )
     {
         new ImageJ().ui().showUI();
 
-        OpenMultipleImagesAndLabelsCommand command = new OpenMultipleImagesAndLabelsCommand();
-
+        OpenImageAndLabelsCommand command = new OpenImageAndLabelsCommand();
         String root = "/Users/tischer/Documents/bacteria-halo-quantification-data/many_images_output/";
-        //String root = "/Users/tischer/Documents/bacteria-halo-quantification-data/few_images_output/";
-        command.image0 = new File( root + ".*_intensities.tiff" );
-        //command.image1 = new File( root + ".*_bg_mask.tiff" );
-
-        command.labels0 = new File( root + ".*_halo_labels.tiff" );
-        command.table0 = new File( root + ".*_measurements.csv" );
+        command.image = new File( root + ".*_intensities.tiff" );
+        command.labels = new File( root + ".*_halo_labels.tiff" );
+        command.table = new File( root + ".*_measurements.csv" );
 
         command.run();
     }
diff --git a/src/test/resources/collections/blobs-grid-table.txt b/src/test/resources/collections/blobs-grid-table.txt
new file mode 100644
index 00000000..08eb14a3
--- /dev/null
+++ b/src/test/resources/collections/blobs-grid-table.txt
@@ -0,0 +1,5 @@
+uri	type	affine	color	view	labels_table
+blobs.tif	intensities	(10,0,0,0,0,10,0,0,0,0,1,0)		grid_intensities	
+blobs-labels.tif	labels	(10,0,0,0,0,10,0,0,0,0,1,0)		grid_labels	blobs-labels.csv
+blobs2.tif	intensities	(10,0,0,0,0,10,0,0,0,0,1,0)		grid_intensities	
+blobs2-labels.tif	labels	(10,0,0,0,0,10,0,0,0,0,1,0)		grid_labels	blobs2-labels.csv
\ No newline at end of file