diff --git a/segmentation/cells/UNet3DPlatyCellProbs.model/UNet3DPlatyCellProbs.model.yaml b/segmentation/cells/UNet3DPlatyCellProbs.model/UNet3DPlatyCellProbs.model.yaml index 92ec3644..cf062dd9 100644 --- a/segmentation/cells/UNet3DPlatyCellProbs.model/UNet3DPlatyCellProbs.model.yaml +++ b/segmentation/cells/UNet3DPlatyCellProbs.model/UNet3DPlatyCellProbs.model.yaml @@ -39,15 +39,10 @@ outputs: reference_input: raw scale: [1, 1, 1, 1, 1] offset: [0, 0, 0, 0, 0] - # TODO for now we could put this into the model - # TODO we need a post-processing op to average the output channels - # postprocessing: - # - name: average_channels - # kwargs: {start_channel: 0, stop_channel: 3} language: python framework: pytorch -source: models.UNetAnisotropic +source: ./models.py::UNetAnisotropic kwargs: in_channels: 1 out_channels: 12 diff --git a/segmentation/cells/UNet3DPlatyCellProbs.model/test_output.npy b/segmentation/cells/UNet3DPlatyCellProbs.model/test_output.npy index 4b51ade2..01c96313 100644 Binary files a/segmentation/cells/UNet3DPlatyCellProbs.model/test_output.npy and b/segmentation/cells/UNet3DPlatyCellProbs.model/test_output.npy differ