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We need the two mappings as SSSOM files, we will serve them throught the Monarch Mapping Commons.
@joeflack4 give me a sense if you will be able to do this quickly or if this will take you more than 1 or 2 hours. If the former, I would suggest to couple this issue with #15 and do them both at once. @twhetzel do you agree? Both these issues require processing of the same file (MedgenIDMappings). If the latter, i.e. it will likely take you more than 2 hours, please let me know before you attempt to tackle this.
The text was updated successfully, but these errors were encountered:
Yes, it seems doable in less than 2 hours. I just spent 20 minutes reading up on this, had to skip most of obophenotype/human-phenotype-ontology#9750, it's more than I need to know. I lost my MedGen environment when my PC died so I had to set a few things up. It sounds like this one can come before #15 and before monarch-initiative/mondo-ingest#412 then. I should be able to start on this tomorrow or Thursday. Edit: I heard a priority update on this; will do this in between my two ICD11 PRs.
joeflack4
changed the title
Add HPO<->UMLS and HPO<->MeSH mapping to medgen release
Add HPO<->UMLS and HPO<->MeSH mapping to MedGen release
Mar 13, 2024
Context here: obophenotype/human-phenotype-ontology#9750
We need the two mappings as SSSOM files, we will serve them throught the Monarch Mapping Commons.
@joeflack4 give me a sense if you will be able to do this quickly or if this will take you more than 1 or 2 hours. If the former, I would suggest to couple this issue with #15 and do them both at once. @twhetzel do you agree? Both these issues require processing of the same file (MedgenIDMappings). If the latter, i.e. it will likely take you more than 2 hours, please let me know before you attempt to tackle this.
The text was updated successfully, but these errors were encountered: