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Bug: GH action: out of memory #8

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joeflack4 opened this issue Aug 20, 2023 · 1 comment
Open
2 tasks

Bug: GH action: out of memory #8

joeflack4 opened this issue Aug 20, 2023 · 1 comment
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@joeflack4
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bug Something isn't working

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@joeflack4
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joeflack4 commented Aug 20, 2023 •
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Overview

From the log:

robot convert -i medgen-disease-extract.owl -o medgen.obographs.json
Exception in thread "main" java.lang.OutOfMemoryError: Java heap space

Tasks

  • 1. Fix the issue
  • 2. Reactivate the action cronjob

Possible solutions

MacOS images have more memory than ubuntu. I could try that.

Additional information

This is sorta moot if we end up having the MedGen team do the ingest instead of us.
@joeflack4 joeflack4 self-assigned this Aug 20, 2023
@joeflack4 joeflack4 added the bug Something isn't working label Aug 20, 2023
joeflack4 added a commit that referenced this issue Aug 20, 2023
@joeflack4
- Update: GitHub action: Deactivated cronjob until (i) out of memory …
3c33648 
…bug fixed (#8), (ii) we decided if we're actually doing this ingest rather than the MedGen team
@matentzn
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Shelve, for now, but add to your board as medium priority

@joeflack4 joeflack4 mentioned this issue Aug 30, 2023
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This was referenced Oct 18, 2024
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