New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Ingest new genecards/malacards version (EMV) #761

Open

matentzn opened this issue Jan 20, 2025 · 0 comments

Member

matentzn commented Jan 20, 2025

An updated dump with the mapping between Mondo and the new MalaCards v5.23 version is now available at:
https://genecardscustomers.blob.core.windows.net/mondo/Mondo_MalaCards_v5.23.tsv

I have reached out to the team to provide us with a link to a "latest" version as well.

The last time we ingest MalaCards we did it manually (ad hoc), so what needs to be done here is write a script that:

Download/Parse the table
Transform to a suitable robot template that looks like my manual efforts here, with a script
Add it into EMC directory

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment