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SRA data problem #23

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AmoriLi opened this issue Apr 27, 2023 · 1 comment
Open

SRA data problem #23

AmoriLi opened this issue Apr 27, 2023 · 1 comment

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@AmoriLi
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AmoriLi commented Apr 27, 2023

HI~
Recently, I came across an issue when downloading the source data to do some deeper analysis about tracing data. The problem is: e.g. SRR7347028 seems only contain one file not common 3 files when "fastq-dump --split-3 SRR7347028.sra" (resulted only SRR7347028.fastq.gz) or "fastq-dump --split-files SRR7347028.sra" (resulted only SRR7347028_1.fastq.gz).
Screenshot 2023-04-27 at 20 55 08

And this sample was described as follows:

Screenshot 2023-04-27 at 20 51 06

Also I had found the Speicific Notice about 3'-end sequencing in your protocol:
Screenshot 2023-04-27 at 20 53 41

Could you please give me some hints about this issue?

@AmoriLi
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AmoriLi commented Apr 27, 2023

I see. What you have deposited is the bam file.

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