From b7aa02775d811ef779f3ef3e6ce04559d18c356f Mon Sep 17 00:00:00 2001
From: chrisjonesBSU <chrisjones4@u.boisestate.edu>
Date: Sun, 14 Jul 2024 09:17:36 -0600
Subject: [PATCH 1/3] replace lark-parser with lark in env files

---
 environment-dev-win.yml | 2 +-
 environment-dev.yml     | 2 +-
 environment-win.yml     | 2 +-
 environment.yml         | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/environment-dev-win.yml b/environment-dev-win.yml
index 4f8d70ce..5a5d1ecd 100644
--- a/environment-dev-win.yml
+++ b/environment-dev-win.yml
@@ -5,7 +5,7 @@ channels:
 dependencies:
   - bump2version
   - codecov
-  - lark-parser
+  - lark
   - lxml
   - mbuild>=0.17
   - treelib
diff --git a/environment-dev.yml b/environment-dev.yml
index 0485ab36..240a4f95 100644
--- a/environment-dev.yml
+++ b/environment-dev.yml
@@ -4,7 +4,7 @@ channels:
 dependencies:
   - bump2version
   - codecov
-  - lark-parser
+  - lark
   - lxml
   - mbuild>=0.17
   - treelib
diff --git a/environment-win.yml b/environment-win.yml
index cc6a7090..89b6e94b 100644
--- a/environment-win.yml
+++ b/environment-win.yml
@@ -3,7 +3,7 @@ channels:
   - conda-forge
   - omnia
 dependencies:
-  - lark-parser
+  - lark
   - lxml
   - networkx>=2.5
   - openmm
diff --git a/environment.yml b/environment.yml
index 59d7a4e9..9355322b 100644
--- a/environment.yml
+++ b/environment.yml
@@ -2,7 +2,7 @@ name: foyer
 channels:
   - conda-forge
 dependencies:
-  - lark-parser
+  - lark
   - lxml
   - gmso
   - networkx>=2.5

From 9b4d36b8f3c4bfbbb654b0bd36cda1e391ac468b Mon Sep 17 00:00:00 2001
From: chrisjonesBSU <chrisjones4@u.boisestate.edu>
Date: Sat, 20 Jul 2024 08:20:32 -0600
Subject: [PATCH 2/3] update versions in CI actions

---
 .github/workflows/CI.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/CI.yaml b/.github/workflows/CI.yaml
index 049ff98e..febb9341 100644
--- a/.github/workflows/CI.yaml
+++ b/.github/workflows/CI.yaml
@@ -26,7 +26,7 @@ jobs:
         shell: bash -l {0}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         name: Checkout Branch / Pull Request
 
       - name: Install Mamba (Linux)
@@ -42,7 +42,7 @@ jobs:
         run: python -m pytest -v -nauto --cov=foyer --cov-report=xml --cov-append --cov-config=setup.cfg --color yes --pyargs foyer
 
       - name: Upload Coverage Report
-        uses: codecov/codecov-action@v2
+        uses: codecov/codecov-action@v4
         with:
           name: Foyer-Coverage
           verbose: true
@@ -63,7 +63,7 @@ jobs:
         shell: bash -l {0}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         name: Checkout Branch / Pull Request
 
       - name: Install Mamba (Linux)
@@ -95,7 +95,7 @@ jobs:
         shell: bash -l {0}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         name: Checkout Branch / Pull Request
 
       - name: Install Mamba

From d2ad66055ae6066fa828fe8761457e0878be79d6 Mon Sep 17 00:00:00 2001
From: chrisjonesBSU <chrisjones4@u.boisestate.edu>
Date: Mon, 19 Aug 2024 11:06:48 -0600
Subject: [PATCH 3/3] remove repeat gmso line in env file

---
 environment-dev.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/environment-dev.yml b/environment-dev.yml
index 240a4f95..5d2c94c9 100644
--- a/environment-dev.yml
+++ b/environment-dev.yml
@@ -14,7 +14,6 @@ dependencies:
   - parmed>=3.4.3
   - ele
   - openff-toolkit >=0.11
-  - gmso
   - pip
   - pre-commit
   - pytest