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Detecting 41 Marker genes instead of 40? #1

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JSSaini opened this issue Jul 1, 2024 · 0 comments
Open

Detecting 41 Marker genes instead of 40? #1

JSSaini opened this issue Jul 1, 2024 · 0 comments

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@JSSaini
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JSSaini commented Jul 1, 2024

Greetings, I am currently executing the FetchMGs script with the most recent version, and it is displaying a total of 41 markers genes for each genome instead of the expected 40. Can you provide any insights on whether this discrepancy is normal? Thank you.

for i in `ls *.2500.faa | awk 'BEGIN{FS=".2500.faa"}{print $1}'`; do python /home/saini/FetchMGs/fetchmgs/fetchmgs.py -m extraction $i.2500.faa -o $i.2500.FetchMGs -v -i; done

Following are the respective COG IDs

COG0016.faa
COG0018.faa
COG0048.faa
COG0049.faa
COG0052.faa
COG0080.faa
COG0081.faa
COG0085.faa
COG0086.faa
COG0087.faa
COG0088.faa
COG0090.faa
COG0091.faa
COG0092.faa
COG0093.faa
COG0094.faa
COG0096.faa
COG0097.faa
COG0098.faa
COG0099.faa
COG0100.faa
COG0102.faa
COG0103.faa
COG0124.faa
COG0172.faa
COG0184.faa
COG0185.faa
COG0186.faa
COG0197.faa
COG0200.faa
COG0201.faa
COG0202.faa
COG0215.faa
COG0256.faa
COG0495.faa
COG0522.faa
COG0525.faa
COG0533.faa
COG0541.faa
COG0552.faa
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