diff --git a/conda_envs/mtbseq-nf-env.yml b/conda_envs/mtbseq-nf-env.yml
index bd708ea..59087c4 100644
--- a/conda_envs/mtbseq-nf-env.yml
+++ b/conda_envs/mtbseq-nf-env.yml
@@ -6,4 +6,4 @@ dependencies:
   - bioconda::mtbseq=1.0.3
   - bioconda/linux-64::gatk=3.8.0=py36_0
   - bioconda::fastqc=0.11.9
-  - bioconda::multiqc=1.9
+  - bioconda::multiqc=1.12
diff --git a/modules/qc/fastqc.nf b/modules/qc/fastqc.nf
index cc00455..961bdb7 100644
--- a/modules/qc/fastqc.nf
+++ b/modules/qc/fastqc.nf
@@ -7,7 +7,7 @@ process FASTQC {
 
     output:
     tuple path('*.html'), path('*.zip')
-
+    path("*.{html,zip}"), emit: html_zip_ch
 
     script:
 
diff --git a/workflows/qc_reports.nf b/workflows/qc_reports.nf
index d4666ae..b7d44ab 100644
--- a/workflows/qc_reports.nf
+++ b/workflows/qc_reports.nf
@@ -8,6 +8,6 @@ workflow QC_REPORTS {
 
     main:
          FASTQC(reads_ch)
-         MULTIQC(FASTQC.out.collect())
+         MULTIQC(FASTQC.out.html_zip_ch.collect())
 
 }