I got an error: File "/data/program/ViFi/ViFi/scripts/run_vifi.py", line 118, in <module> reference_dir = os.environ['REFERENCE_REPO'] File "/usr/lib/python2.7/UserDict.py", line 40, in __getitem__ raise KeyError(key) KeyError: 'REFERENCE_REPO'

[byeonggill]

Hi
I install docker and execute setup_linux_mac.sh
my cmd: sudo python $VIFI_DIR/scripts/run_vifi.py --cpus 2 --hmm_list $VIFI_DIR/data/hbv/hmms/hmms.txt -f $VIFI_DIR/test/data/test_R1.fq.gz -r $VIFI_DIR/test/data/test_R2.fq.gz -o $VIFI_DIR/tmp/docker/ --docke
but, I got the following error
File "/data/program/ViFi/ViFi/scripts/run_vifi.py", line 118, in
reference_dir = os.environ['REFERENCE_REPO']
File "/usr/lib/python2.7/UserDict.py", line 40, in getitem
raise KeyError(key)
KeyError: 'REFERENCE_REPO'

I confirmed my environmental variables.

[byeonggill]

I resolve above issue.
but, Even command -v hbv, vifi run hpv in docker version.
why ?