ci_test.yml

name: Python package CI/CD

on:
  push:
    branches: [ main ]
  pull_request:
    branches: [ main ]
  release:
    types: [published]

jobs:
  tests:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.9', '3.10', '3.11', '3.12']
    steps:
      - name: Checkout repository
        uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip setuptools wheel cython
          #pip install "scipy>=1.11.3" --only-binary=scipy
          pip install "numpy>=1.16.3" --only-binary=numpy "scipy>=1.11.3" --only-binary=scipy
          pip install black pytest pytest-cov
          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
        shell: bash
      - name: Build Cython extensions
        run: python setup.py build_ext --inplace
      - name: Lint with black
        run: |
          black . --check
      - name: Install package in editable mode
        run: pip install -e .
        shell: bash
      - name: Run tests with pytest
        run: |
          # Add your testing command/script here
          pytest --cov=fastshermanmorrison --cov-report xml:coverage.xml tests/
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          files: ./coverage.xml
          flags: unittests
          name: codecov-umbrella
          fail_ci_if_error: true


  build:
    needs: tests
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: '3.x'
      - name: Install build dependencies
        run: |
          python -m pip install --upgrade pip setuptools wheel cython cibuildwheel==2.3.1
      - name: Install project dependencies
        run: |
          pip install "numpy>=1.16.3" --only-binary=numpy "scipy>=1.2.0" --only-binary=scipy
          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
      - name: Build wheels using cibuildwheel
        run: cibuildwheel --output-dir dist
        env:
          # If you need to build on a specific platform like macOS, set the CIBW_PLATFORM environment variable
          # CIBW_PLATFORM: "macos"
          #CIBW_BEFORE_BUILD: "pip install scipy>=1.11.3 --only-binary=scipy"
          CIBW_BEFORE_BUILD: "pip install numpy>=1.16.3 --only-binary=numpy scipy>=1.2.0 --only-binary=scipy"
          CIBW_BUILD_VERBOSITY: 1
          #CIBW_SKIP: "pp* cp27-* cp35-* cp36-* cp37-* cp38-*"
          CIBW_SKIP: "pp* cp27-* cp35-* cp36-* cp37-* cp38-* *-win32 *-manylinux_i686 *-musllinux_i686 *-macosx_10_6_intel *-macosx_10_9_intel *-macosx_10_10_intel *-macosx_10_11_intel *-macosx_10_12_intel *-macosx_10_13_intel *-macosx_10_14_intel *-macosx_10_15_intel"
          CIBW_ARCHS: "x86_64"
          CIBW_ARCHS_MACOS: "x86_64 arm64"
          CIBW_MANYLINUX_X86_64_IMAGE: "manylinux2014"
      - name: Build source distribution
        run: python setup.py sdist
      - uses: actions/upload-artifact@v4
        with:
          name: dist
          path: |
            ./dist/*.whl
            ./dist/*.tar.gz


  deploy:
    needs: build
    runs-on: ubuntu-latest
    if: github.event_name == 'release' #&& github.ref == 'refs/heads/main'
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: '3.x'
      - name: Download built distributions
        uses: actions/download-artifact@v4
        with:
          name: dist
          path: ./
      - name: List files in dist
        run: echo "Content of dist:" && ls -lah dist/ && echo "Content of ./:" && ls -lah ./
      - name: Publish to PyPI
        run: |
          python -m pip install --upgrade twine
          #twine upload dist/*
          #twine upload --repository-url https://test.pypi.org/legacy dist/*
          python -m twine upload ./dist/*
        env:
          #TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
          #TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
          TWINE_USERNAME: __token__
          TWINE_PASSWORD: ${{ secrets.TEST_PYPI_API_TOKEN }}
          TWINE_REPOSITORY_URL: https://test.pypi.org/legacy/



#  conda-package:
#    runs-on: ubuntu-latest
#    strategy:
#      matrix:
#        python-version: ['3.9', '3.10', '3.11', '3.12']
#    steps:
#      - uses: actions/checkout@v2
#      - name: Set up conda for Python ${{ matrix.python-version }}
#        uses: conda-incubator/setup-miniconda@v2
#        with:
#          auto-update-conda: true
#          python-version: ${{ matrix.python-version }}
#      - name: Build conda package
#        run: conda build .
#      - name: Upload conda package
#        env:
#          ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }}
#          USER_NAME: ${{ env.GITHUB_REPOSITORY_OWNER }}
#        run: anaconda upload --user $USER_NAME $(conda build . --output)