From fbe421d30f91d35cd88e810806fd2a0e17bc4ea1 Mon Sep 17 00:00:00 2001 From: James Norton Date: Mon, 6 Jan 2025 13:59:15 -0500 Subject: [PATCH] HARMONY-1876: Add shapefile simplification to try to speed up l2ss --- .../harmony/app/frontends/free-text-query.ts | 2 + .../app/middleware/shapefile-converter.ts | 65 +- .../1.0.0/ogc-api-coverages-v1.0.0.yml | 11 +- services/harmony/app/server.ts | 1 + services/harmony/package-lock.json | 5109 +++++++++-------- services/harmony/package.json | 3 +- 6 files changed, 2840 insertions(+), 2351 deletions(-) diff --git a/services/harmony/app/frontends/free-text-query.ts b/services/harmony/app/frontends/free-text-query.ts index 2da1c6789..4fa33fb8a 100644 --- a/services/harmony/app/frontends/free-text-query.ts +++ b/services/harmony/app/frontends/free-text-query.ts @@ -166,6 +166,7 @@ interface HarmonyJobStatus { async function submitHarmonyRequest(collection, variable, queryParams, geoJson: string, token): Promise { queryParams.forceAsync = true; queryParams.maxResults = 1; + queryParams.simplifyShapefile = true; const encodedVariable = encodeURIComponent(variable); const baseUrl = `http://localhost:3000/${collection}/ogc-api-coverages/1.0.0/collections/${encodedVariable}/coverage/rangeset`; const querystr = querystring.stringify(queryParams); @@ -186,6 +187,7 @@ async function submitHarmonyRequest(collection, variable, queryParams, geoJson: filename: 'data.geojson', contentType: 'application/geo+json', }); + // formData.append('simplifyShapefile', 'true'); console.log(`Making request to ${baseUrl}?${querystr}`); diff --git a/services/harmony/app/middleware/shapefile-converter.ts b/services/harmony/app/middleware/shapefile-converter.ts index e16a116b1..3c724057e 100644 --- a/services/harmony/app/middleware/shapefile-converter.ts +++ b/services/harmony/app/middleware/shapefile-converter.ts @@ -3,6 +3,7 @@ import { get, isEqual, cloneDeep } from 'lodash'; import rewind from '@mapbox/geojson-rewind'; import * as togeojson from '@tmcw/togeojson'; import splitGeoJson from 'geojson-antimeridian-cut'; +import * as turf from '@turf/turf'; import { DOMParser } from '@xmldom/xmldom'; import * as shpjs from 'shpjs'; @@ -15,6 +16,9 @@ import { RequestValidationError, HttpError, ServerError } from '../util/errors'; import { defaultObjectStore } from '../util/object-store'; import { listToText } from '@harmony/util/string'; import { cookieOptions } from '../util/cookies'; +import HarmonyRequest from '../models/harmony-request'; +import { keysToLowerCase } from '../util/object'; +import { point } from 'leaflet'; /** * Converts the given ESRI Shapefile to GeoJSON and returns the resulting file. Note, @@ -143,9 +147,10 @@ export function normalizeGeoJsonCoords(geojson: any): any { * Change longitudes of a geojson file to be in the [-180, 180] range and split at antimeridian * if needed. Will also change coordinate order to counter-clockwise if needed. * @param geoJson - An object representing the json for a geojson file + * @parm simplifyShapefile - if true, reduce the point count of the shapefile - defaults to false * @returns An object with the normalized geojson */ -export function normalizeGeoJson(geoJson: object): object { +export function normalizeGeoJson(geoJson: object, simplifyShapefile = false): object { let newGeoJson = normalizeGeoJsonCoords(geoJson); // eslint-disable-next-line @typescript-eslint/dot-notation @@ -159,6 +164,28 @@ export function normalizeGeoJson(geoJson: object): object { // force ccw winding newGeoJson = rewind(newGeoJson, false); + + if (simplifyShapefile) { + let tolerance = 0.1; + const highQuality = true; + let pointCount = geoJsonPointCount(newGeoJson); + console.log(`INITIAL POINT COUNT: ${pointCount}`); + let loopCount = 0; + // loop up to five times, or until the point count of the geojson is <= 5000 + // TODO put these constants (5, 5000) in env vars or some such + while (loopCount < 5 && pointCount > 5000) { + newGeoJson = turf.simplify(newGeoJson, { tolerance, highQuality }); + pointCount = geoJsonPointCount(newGeoJson); + console.log(`POINT COUNT: ${pointCount}`); + tolerance = tolerance * 10.0; + loopCount++; + } + console.log(`FINAL POINT COUNT: ${pointCount}`); + } else { + console.log("NOT SIMPLIFYING SHAPEFILE"); + } + console.log(`SHAPEFILE: ${JSON.stringify(newGeoJson, null, 2)}`); + return newGeoJson; } @@ -166,9 +193,10 @@ export function normalizeGeoJson(geoJson: object): object { * Handle any weird cases like splitting geometry that crosses the antimeridian * @param url - the url of the geojson file * @param isLocal - whether the url is a downloaded file (true) or needs to be downloaded (false) + * @parm simplifyShapefile - if true, reduce the point count of the shapefile - defaults to false * @returns the link to the geojson file */ -async function normalizeGeoJsonFile(url: string, isLocal: boolean): Promise { +async function normalizeGeoJsonFile(url: string, isLocal: boolean, simplifyShapefle = false): Promise { const store = defaultObjectStore(); let originalGeoJson: object; const localFile = url; @@ -177,7 +205,7 @@ async function normalizeGeoJsonFile(url: string, isLocal: boolean): Promise { + pointCount += 1; + }); + return pointCount; +} + /** * Express.js middleware which extracts shapefiles from the incoming request and - * ensures that they are in GeoJSON in the data operation + * ensures that they are in GeoJSON in the data operation, optionally reducing the number + * of points in the shapefile to fit the CMR limit (5000) * * @param req - The client request, containing an operation * @param res - The client response * @param next - The next function in the middleware chain */ -export default async function shapefileConverter(req, res, next: NextFunction): Promise { +export default async function shapefileConverter(req: HarmonyRequest, res, next: NextFunction): Promise { const { operation } = req; + // TODO add proper handling/documentation of the simplifyShapefile parameter + const lowerCaseQuery = keysToLowerCase(req.query); + const lowerCaseBody = keysToLowerCase(req.body); + const simplifyShapefile = lowerCaseQuery.simplifyshapefile || lowerCaseBody.simplifyshapefile; + // const simplifyShapefile = true; + try { const shapefile = get(req, 'files.shapefile[0]') || get(req, 'file') || req.signedCookies.shapefile; res.clearCookie('shapefile', cookieOptions); @@ -224,6 +272,7 @@ export default async function shapefileConverter(req, res, next: NextFunction): let convertedFile; try { convertedFile = await converter.geoJsonConverter(originalFile, req.context.logger); + // TODO handle simplification for converted file operation.geojson = await store.uploadFile(convertedFile, `${url}.geojson`); } finally { if (convertedFile) { @@ -231,7 +280,11 @@ export default async function shapefileConverter(req, res, next: NextFunction): } } } else { - operation.geojson = await normalizeGeoJsonFile(url, false); + console.log('NO NEED TO CONVERT GEOJSON'); + let geoJson = await normalizeGeoJsonFile(url, false, simplifyShapefile); + + + operation.geojson = geoJson; } } catch (e) { if (e instanceof HttpError) { diff --git a/services/harmony/app/schemas/ogc-api-coverages/1.0.0/ogc-api-coverages-v1.0.0.yml b/services/harmony/app/schemas/ogc-api-coverages/1.0.0/ogc-api-coverages-v1.0.0.yml index 39c7e6a05..4871d0b53 100644 --- a/services/harmony/app/schemas/ogc-api-coverages/1.0.0/ogc-api-coverages-v1.0.0.yml +++ b/services/harmony/app/schemas/ogc-api-coverages/1.0.0/ogc-api-coverages-v1.0.0.yml @@ -345,6 +345,7 @@ paths: - $ref: "#/components/parameters/variable" - $ref: "#/components/parameters/average" - $ref: "#/components/parameters/label" + - $ref: "#/components/parameters/simplifyShapefile" responses: "200": description: A coverage's range set. @@ -388,6 +389,7 @@ paths: - $ref: "#/components/parameters/variable" - $ref: "#/components/parameters/average" - $ref: "#/components/parameters/label" + - $ref: "#/components/parameters/simplifyShapefile" requestBody: content: multipart/form-data: @@ -1008,4 +1010,11 @@ components: type: array items: type: string - minLength: 1 \ No newline at end of file + minLength: 1 + simplifyShapefile: + name: simplifyShapefile + in: query + description: if "true", reduce the point count in uploaded shapefile + required: false + schema: + type: boolean \ No newline at end of file diff --git a/services/harmony/app/server.ts b/services/harmony/app/server.ts index 34aae9533..83e4d9ead 100644 --- a/services/harmony/app/server.ts +++ b/services/harmony/app/server.ts @@ -142,6 +142,7 @@ function buildBackendServer(port: number, hostBinding: string, useHttps: string) function buildFrontendServer(port: number, hostBinding: string, config: RouterConfig): http.Server | https.Server { const appLogger = logger.child({ application: 'frontend' }); const app = express(); + app.use(express.json({ limit: '10mb' })); app.set('query parser', (str) => qs.parse(str, { comma: true }), ); diff --git a/services/harmony/package-lock.json b/services/harmony/package-lock.json index 8b503c0f4..d722ba4ac 100644 --- a/services/harmony/package-lock.json +++ b/services/harmony/package-lock.json @@ -117,6 +117,7 @@ "@pollyjs/adapter-node-http": "^6.0.6", "@pollyjs/core": "^6.0.6", "@pollyjs/persister-fs": "^6.0.6", + "@turf/turf": "^7.2.0", "@types/chai": ">=4.3.20 <5.0.0", "@types/chai-as-promised": ">=7.1.8 <8.0.0", "@types/cookie": "^0.6.0", @@ -14710,189 +14711,202 @@ } }, "node_modules/@turf/along": { - "version": "7.1.0", - "resolved": "https://registry.npmjs.org/@turf/along/-/along-7.1.0.tgz", - "integrity": "sha512-WLgBZJ/B6CcASF6WL7M+COtHlVP0hBrMbrtKyF7KBlicwRuijJZXDtEQA5oLgr+k1b2HqGN+UqH2A0/E719enQ==", + "version": "7.2.0", + "resolved": "https://registry.npmjs.org/@turf/along/-/along-7.2.0.tgz", + "integrity": 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