From e371b5a3e31865d621eb85f224e1af97c9129061 Mon Sep 17 00:00:00 2001
From: Gregory Jefferis <jefferis@gmail.com>
Date: Wed, 7 Oct 2020 00:07:57 +0100
Subject: [PATCH] remove broken step in example

* see #27
---
 R/hemibrain_locality.R               | 6 +++---
 man/hemibrain_compartment_metrics.Rd | 6 +++---
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/R/hemibrain_locality.R b/R/hemibrain_locality.R
index 5b4b9523..8571ab7a 100644
--- a/R/hemibrain_locality.R
+++ b/R/hemibrain_locality.R
@@ -23,6 +23,9 @@
 #' "5813054716", "5813018847", "5813055448", "1763037543", "2101391269",
 #' "1794037618", "5813018729", "2013333009")
 #'
+#' # use a smaller group in examples
+#' al.local.neurons=al.local.neurons[1:5]
+#'
 #' # Get neurons
 #' neurons = neuprint_read_neurons(al.local.neurons)
 #'
@@ -38,9 +41,6 @@
 #' just.leaves = TRUE, # just look how much the leaves of skeletons overlap, quicker (default)
 #' delta = 5)
 #'
-#' # Plot
-#' hist(hcm$overlap_locality, breaks = 100)
-#'
 #'}
 #' @return a \code{data.frame} of metrics broken down by putative axon and dendrite, and their overlap_locality scores
 #' @seealso \code{\link{hemibrain_overlap_locality}}
diff --git a/man/hemibrain_compartment_metrics.Rd b/man/hemibrain_compartment_metrics.Rd
index 76fd6eac..c9bf7f36 100644
--- a/man/hemibrain_compartment_metrics.Rd
+++ b/man/hemibrain_compartment_metrics.Rd
@@ -49,6 +49,9 @@ al.local.neurons = c("1702323386", "2068966051", "2069311379", "1702305987", "58
 "5813054716", "5813018847", "5813055448", "1763037543", "2101391269",
 "1794037618", "5813018729", "2013333009")
 
+# use a smaller group in examples
+al.local.neurons=al.local.neurons[1:5]
+
 # Get neurons
 neurons = neuprint_read_neurons(al.local.neurons)
 
@@ -64,9 +67,6 @@ resample = NULL,
 just.leaves = TRUE, # just look how much the leaves of skeletons overlap, quicker (default)
 delta = 5)
 
-# Plot
-hist(hcm$overlap_locality, breaks = 100)
-
 }
 }
 \seealso{