deep_layer_network.py

import numpy as np
import h5py
import matplotlib.pyplot as plt
from common import *


#%matplotlib inline
plt.rcParams['figure.figsize'] = (5.0, 4.0) # set default size of plots
plt.rcParams['image.interpolation'] = 'nearest'
plt.rcParams['image.cmap'] = 'gray'

#%load_ext autoreload
#%autoreload 2

np.random.seed(1)

# GRADED FUNCTION: initialize_parameters

def initialize_parameters(n_x, n_h, n_y):
    """
    Argument:
    n_x -- size of the input layer
    n_h -- size of the hidden layer
    n_y -- size of the output layer
    
    Returns:
    parameters -- python dictionary containing your parameters:
                    W1 -- weight matrix of shape (n_h, n_x)
                    b1 -- bias vector of shape (n_h, 1)
                    W2 -- weight matrix of shape (n_y, n_h)
                    b2 -- bias vector of shape (n_y, 1)
    """
    
    np.random.seed(1)
    
    W1 = np.random.randn(n_h,n_x) * 0.01
    b1 = np.zeros((n_h,1))
    W2 = np.random.randn(n_y,n_h) * 0.01
    b2 = np.zeros((n_y,1))
    
    parameters = {"W1": W1,
                  "b1": b1,
                  "W2": W2,
                  "b2": b2}
    
    return parameters

# GRADED FUNCTION: initialize_parameters_deep

def initialize_parameters_deep(layer_dims):
    """
    Arguments:
    layer_dims -- python array (list) containing the dimensions of each layer in our network
    
    Returns:
    parameters -- python dictionary containing your parameters "W1", "b1", ..., "WL", "bL":
                    Wl -- weight matrix of shape (layer_dims[l], layer_dims[l-1])
                    bl -- bias vector of shape (layer_dims[l], 1)
    """
    
    np.random.seed(3)
    parameters = {}
    L = len(layer_dims) # number of layers in the network

    for l in range(1, L):
        parameters['W' + str(l)] = np.random.randn(layer_dims[l],layer_dims[l-1]) * 0.01
        parameters['b' + str(l)] = np.zeros((layer_dims[l],1))
        
        assert(parameters['W' + str(l)].shape == (layer_dims[l], layer_dims[l - 1]))
        assert(parameters['b' + str(l)].shape == (layer_dims[l], 1))

        
    return parameters

# GRADED FUNCTION: linear_forward

def linear_forward(A, W, b):
    """
    Implement the linear part of a layer's forward propagation.

    Arguments:
    A -- activations from previous layer (or input data): (size of previous layer, number of examples)
    W -- weights matrix: numpy array of shape (size of current layer, size of previous layer)
    b -- bias vector, numpy array of shape (size of the current layer, 1)

    Returns:
    Z -- the input of the activation function, also called pre-activation parameter 
    cache -- a python tuple containing "A", "W" and "b" ; stored for computing the backward pass efficiently
    """
    
    Z = np.dot(W,A) + b
    cache = (A, W, b)
    
    return Z, cache

# GRADED FUNCTION: linear_activation_forward

def linear_activation_forward(A_prev, W, b, activation):
    """
    Implement the forward propagation for the LINEAR->ACTIVATION layer

    Arguments:
    A_prev -- activations from previous layer (or input data): (size of previous layer, number of examples)
    W -- weights matrix: numpy array of shape (size of current layer, size of previous layer)
    b -- bias vector, numpy array of shape (size of the current layer, 1)
    activation -- the activation to be used in this layer, stored as a text string: "sigmoid" or "relu"

    Returns:
    A -- the output of the activation function, also called the post-activation value 
    cache -- a python tuple containing "linear_cache" and "activation_cache";
             stored for computing the backward pass efficiently
    """
    
    if activation == "sigmoid":
        Z, linear_cache = linear_forward(A_prev,W,b)
        A, activation_cache = sigmoid_cache(Z)   
    elif activation == "relu":   
        Z, linear_cache = linear_forward(A_prev,W,b)
        A, activation_cache = relu_cache(Z)
    cache = (linear_cache, activation_cache)

    return A, cache

def L_model_forward(X, parameters):
    """
    Implement forward propagation for the [LINEAR->RELU]*(L-1)->LINEAR->SIGMOID computation
    
    Arguments:
    X -- data, numpy array of shape (input size, number of examples)
    parameters -- output of initialize_parameters_deep()
    
    Returns:
    AL -- activation value from the output (last) layer
    caches -- list of caches containing:
                every cache of linear_activation_forward() (there are L of them, indexed from 0 to L-1)
    """

    caches = []
    A = X
    L = len(parameters) // 2                  # number of layers in the neural network
    
    for l in range(1, L):
        A_prev = A 
        A, cache = linear_activation_forward(A_prev,parameters['W'+ str(l)],parameters['b'+ str(l)],activation='relu')
        caches.append(cache)

    AL, cache = linear_activation_forward(A,parameters['W'+ str(L)],parameters['b'+ str(L)],activation='sigmoid')
    caches.append(cache)
          
    return AL, caches


# GRADED FUNCTION: compute_cost

def compute_cost(AL, Y):
    """
    Implement the cost function defined by equation (7).

    Arguments:
    AL -- probability vector corresponding to your label predictions, shape (1, number of examples)
    Y -- true "label" vector (for example: containing 0 if non-cat, 1 if cat), shape (1, number of examples)

    Returns:
    cost -- cross-entropy cost
    """
    
    m = Y.shape[1]
    cost = (-1/m)*np.sum(np.multiply(Y,np.log(AL))+ np.multiply((1-Y),np.log(1-AL)))   
    
    cost = np.squeeze(cost)      # To make sure your cost's shape is what we expect (e.g. this turns [[17]] into 17).
 
    return cost

# GRADED FUNCTION: linear_backward

def linear_backward(dZ, cache):
    """
    Implement the linear portion of backward propagation for a single layer (layer l)

    Arguments:
    dZ -- Gradient of the cost with respect to the linear output (of current layer l)
    cache -- tuple of values (A_prev, W, b) coming from the forward propagation in the current layer

    Returns:
    dA_prev -- Gradient of the cost with respect to the activation (of the previous layer l-1), same shape as A_prev
    dW -- Gradient of the cost with respect to W (current layer l), same shape as W
    db -- Gradient of the cost with respect to b (current layer l), same shape as b
    """
    A_prev, W, b = cache
    m = A_prev.shape[1]

    dW = (1/m)*np.dot(dZ,A_prev.T)
    db = (1/m)*np.sum(dZ,axis=1,keepdims=True)
    dA_prev = np.dot(W.T,dZ)
        
    return dA_prev, dW, db

# GRADED FUNCTION: linear_activation_backward

def linear_activation_backward(dA, cache, activation):
    """
    Implement the backward propagation for the LINEAR->ACTIVATION layer.
    
    Arguments:
    dA -- post-activation gradient for current layer l 
    cache -- tuple of values (linear_cache, activation_cache) we store for computing backward propagation efficiently
    activation -- the activation to be used in this layer, stored as a text string: "sigmoid" or "relu"
    
    Returns:
    dA_prev -- Gradient of the cost with respect to the activation (of the previous layer l-1), same shape as A_prev
    dW -- Gradient of the cost with respect to W (current layer l), same shape as W
    db -- Gradient of the cost with respect to b (current layer l), same shape as b
    """
    linear_cache, activation_cache = cache
    
    if activation == "relu":
        dZ = relu_backward(dA,activation_cache)
        dA_prev, dW, db = linear_backward(dZ,linear_cache)       
    elif activation == "sigmoid":
        dZ = sigmoid_backward(dA,activation_cache)
        dA_prev, dW, db = linear_backward(dZ,linear_cache)     
    
    return dA_prev, dW, db


# GRADED FUNCTION: L_model_backward

def L_model_backward(AL, Y, caches):
    """
    Implement the backward propagation for the [LINEAR->RELU] * (L-1) -> LINEAR -> SIGMOID group
    
    Arguments:
    AL -- probability vector, output of the forward propagation (L_model_forward())
    Y -- true "label" vector (containing 0 if non-cat, 1 if cat)
    caches -- list of caches containing:
                every cache of linear_activation_forward() with "relu" (it's caches[l], for l in range(L-1) i.e l = 0...L-2)
                the cache of linear_activation_forward() with "sigmoid" (it's caches[L-1])
    
    Returns:
    grads -- A dictionary with the gradients
             grads["dA" + str(l)] = ... 
             grads["dW" + str(l)] = ...
             grads["db" + str(l)] = ... 
    """
    grads = {}
    L = len(caches) # the number of layers
    m = AL.shape[1]
    Y = Y.reshape(AL.shape) # after this line, Y is the same shape as AL
    # Initializing the backpropagation
    dAL = - (np.divide(Y, AL) - np.divide(1 - Y, 1 - AL))
    
    # Lth layer (SIGMOID -> LINEAR) gradients. Inputs: "AL, Y, caches". Outputs: "grads["dAL"], grads["dWL"], grads["dbL"]
    dA_prev, dW, db = linear_activation_backward(dAL, caches[L - 1], "sigmoid")
    grads["dA" + str(L-1)], grads["dW" + str(L)], grads["db" + str(L)] = dA_prev, dW, db
    
    for l in reversed(range(L-1)):
        # lth layer: (RELU -> LINEAR) gradients.
        # Inputs: "grads["dA" + str(l + 2)], caches". Outputs: "grads["dA" + str(l + 1)] , grads["dW" + str(l + 1)] , grads["db" + str(l + 1)] 
        dA_prev, dW, db = linear_activation_backward(grads["dA" + str(l+1)], caches[l], "relu")
        grads["dA" + str(l )] = dA_prev
        grads["dW" + str(l + 1)] = dW
        grads["db" + str(l + 1)] = db
        
    return grads

# GRADED FUNCTION: update_parameters

def update_parameters(params, grads, learning_rate):
    """
    Update parameters using gradient descent
    
    Arguments:
    params -- python dictionary containing your parameters 
    grads -- python dictionary containing your gradients, output of L_model_backward
    
    Returns:
    parameters -- python dictionary containing your updated parameters 
                  parameters["W" + str(l)] = ... 
                  parameters["b" + str(l)] = ...
    """
    parameters = params.copy()
    L = len(parameters) // 2 # number of layers in the neural network

    # Update rule for each parameter. Use a for loop.
    for l in range(L):
        parameters["W" + str(l + 1)] = parameters["W" + str(l + 1)] - learning_rate * grads["dW" + str(l + 1)]
        parameters["b" + str(l + 1)] = parameters["b" + str(l + 1)] - learning_rate * grads["db" + str(l + 1)]
        
    return parameters

# GRADED FUNCTION: two_layer_model

def two_layer_model(X, Y, layers_dims, learning_rate = 0.0075, num_iterations = 3000, print_cost=False):
    """
    Implements a two-layer neural network: LINEAR->RELU->LINEAR->SIGMOID.
    
    Arguments:
    X -- input data, of shape (n_x, number of examples)
    Y -- true "label" vector (containing 1 if cat, 0 if non-cat), of shape (1, number of examples)
    layers_dims -- dimensions of the layers (n_x, n_h, n_y)
    num_iterations -- number of iterations of the optimization loop
    learning_rate -- learning rate of the gradient descent update rule
    print_cost -- If set to True, this will print the cost every 100 iterations 
    
    Returns:
    parameters -- a dictionary containing W1, W2, b1, and b2
    """
    
    np.random.seed(1)
    grads = {}
    costs = []                              # to keep track of the cost
    m = X.shape[1]                           # number of examples
    (n_x, n_h, n_y) = layers_dims
    
    # Initialize parameters dictionary, by calling one of the functions you'd previously implemented
    parameters = initialize_parameters(n_x,n_h,n_y)

    # Get W1, b1, W2 and b2 from the dictionary parameters.
    W1 = parameters["W1"]
    b1 = parameters["b1"]
    W2 = parameters["W2"]
    b2 = parameters["b2"]
    
    # Loop (gradient descent)

    for i in range(0, num_iterations):

        # Forward propagation: LINEAR -> RELU -> LINEAR -> SIGMOID. Inputs: "X, W1, b1, W2, b2". Output: "A1, cache1, A2, cache2".
        A1, cache1 = linear_activation_forward(X, W1, b1, activation='relu')
        A2, cache2 = linear_activation_forward(A1, W2, b2, activation='sigmoid')
        # YOUR CODE ENDS HERE
        
        # Compute cost
        cost = compute_cost(A2, Y)
        
        # Initializing backward propagation
        dA2 = - (np.divide(Y, A2) - np.divide(1 - Y, 1 - A2))
        
        # Backward propagation. Inputs: "dA2, cache2, cache1". Outputs: "dA1, dW2, db2; also dA0 (not used), dW1, db1".
        dA1, dW2, db2 = linear_activation_backward(dA2, cache2, activation='sigmoid')
        dA0, dW1, db1 = linear_activation_backward(dA1, cache1, activation='relu')
        
        # Set grads['dWl'] to dW1, grads['db1'] to db1, grads['dW2'] to dW2, grads['db2'] to db2
        grads['dW1'] = dW1
        grads['db1'] = db1
        grads['dW2'] = dW2
        grads['db2'] = db2
        
        update_parameters(parameters, grads, learning_rate)

        # Retrieve W1, b1, W2, b2 from parameters
        W1 = parameters["W1"]
        b1 = parameters["b1"]
        W2 = parameters["W2"]
        b2 = parameters["b2"]
        
        # Print the cost every 100 iterations
        if print_cost and i % 100 == 0 or i == num_iterations - 1:
            print("Cost after iteration {}: {}".format(i, np.squeeze(cost)))
        if i % 100 == 0 or i == num_iterations:
            costs.append(cost)

    return parameters, costs

def plot_costs(costs, learning_rate=0.0075):
    plt.plot(np.squeeze(costs))
    plt.ylabel('cost')
    plt.xlabel('iterations (per hundreds)')
    plt.title("Learning rate =" + str(learning_rate))
    plt.show()

# GRADED FUNCTION: L_layer_model

def L_layer_model(X, Y, layers_dims, learning_rate = 0.0075, num_iterations = 3000, print_cost=False):
    """
    Implements a L-layer neural network: [LINEAR->RELU]*(L-1)->LINEAR->SIGMOID.
    
    Arguments:
    X -- data, numpy array of shape (num_px * num_px * 3, number of examples)
    Y -- true "label" vector (containing 0 if cat, 1 if non-cat), of shape (1, number of examples)
    layers_dims -- list containing the input size and each layer size, of length (number of layers + 1).
    learning_rate -- learning rate of the gradient descent update rule
    num_iterations -- number of iterations of the optimization loop
    print_cost -- if True, it prints the cost every 100 steps
    
    Returns:
    parameters -- parameters learnt by the model. They can then be used to predict.
    """

    np.random.seed(1)
    costs = []                         # keep track of cost
    
    m = X.shape[1]                           # number of examples
    parameters = initialize_parameters_deep(layers_dims)
    
    # Loop (gradient descent)
    for i in range(0, num_iterations):

        # Forward propagation: [LINEAR -> RELU]*(L-1) -> LINEAR -> SIGMOID.
        AL, caches = L_model_forward(X, parameters)

        cost = compute_cost(AL, Y)
    
        # Backward propagation.
        grads = L_model_backward(AL, Y, caches)

        parameters = update_parameters(parameters, grads, learning_rate)

        if print_cost and i % 100 == 0 or i == num_iterations - 1:
            print("Cost after iteration {}: {}".format(i, np.squeeze(cost)))
        if i % 100 == 0 or i == num_iterations:
            costs.append(cost)
    
    return parameters, costs


def predict(X, y, parameters):
    """
    This function is used to predict the results of a  L-layer neural network.
    
    Arguments:
    X -- data set of examples you would like to label
    parameters -- parameters of the trained model
    
    Returns:
    p -- predictions for the given dataset X
    """
    
    m = X.shape[1]
    n = len(parameters) // 2 # number of layers in the neural network
    p = np.zeros((1,m))
    
    # Forward propagation
    probas, caches = L_model_forward(X, parameters)
   
    # convert probas to 0/1 predictions
    for i in range(0, probas.shape[1]):
        if probas[0,i] > 0.5:
            p[0,i] = 1
        else:
            p[0,i] = 0
    
    print("Accuracy: "  + str(np.sum((p == y)/m)))
        
    return p


train_x_orig, train_y, test_x_orig, test_y, classes = load_dataset()
# Example of a picture
index = 10
plt.imshow(train_x_orig[index])
print ("y = " + str(train_y[0,index]) + ". It's a " + classes[train_y[0,index]].decode("utf-8") +  " picture.")

# Explore your dataset 
m_train = train_x_orig.shape[0]
num_px = train_x_orig.shape[1]
m_test = test_x_orig.shape[0]

print ("Number of training examples: " + str(m_train))
print ("Number of testing examples: " + str(m_test))
print ("Each image is of size: (" + str(num_px) + ", " + str(num_px) + ", 3)")
print ("train_x_orig shape: " + str(train_x_orig.shape))
print ("train_y shape: " + str(train_y.shape))
print ("test_x_orig shape: " + str(test_x_orig.shape))
print ("test_y shape: " + str(test_y.shape))

# Reshape the training and test examples 
train_x_flatten = train_x_orig.reshape(train_x_orig.shape[0], -1).T   # The "-1" makes reshape flatten the remaining dimensions
test_x_flatten = test_x_orig.reshape(test_x_orig.shape[0], -1).T

# Standardize data to have feature values between 0 and 1.
train_x = train_x_flatten/255.
test_x = test_x_flatten/255.

print ("train_x's shape: " + str(train_x.shape))
print ("test_x's shape: " + str(test_x.shape))

### CONSTANTS DEFINING THE MODEL ####
n_x = 12288     # num_px * num_px * 3
n_h = 7
n_y = 1
layers_dims = (n_x, n_h, n_y)
learning_rate = 0.0075

print("Training 2 layer network ...")
parameters, costs = two_layer_model(train_x, train_y, layers_dims = (n_x, n_h, n_y), num_iterations = 2500, print_cost=True)
#plot_costs(costs, learning_rate)
predictions_train = predict(train_x, train_y, parameters)
predictions_test = predict(test_x, test_y, parameters)

print("Training 4 layer network ...")
layers_dims = [12288, 20, 7, 5, 1] #  4-layer model

parameters, costs = L_layer_model(train_x, train_y, layers_dims, num_iterations = 2500, print_cost = True)
pred_train = predict(train_x, train_y, parameters)
pred_test = predict(test_x, test_y, parameters)
#print_mislabeled_images(classes, test_x, test_y, pred_test)