Extra specific configuration for sarek pipeline
To use, run the pipeline with -profile uppmax.
This will download and launch the sarek specific uppmax.config which has been pre-configured with a setup suitable for uppmax clusters.
Example: nextflow run nf-core/sarek -profile uppmax
Specific configurations for uppmax clusters has been made for sarek.
- Set paths to reference genomes
- Set path to singularity containers for
irma