From 9b2086684eb1ba3f8260c18e0316d1aa685e5912 Mon Sep 17 00:00:00 2001
From: Arjun Prasad <aprasad@ncbi.nlm.nih.gov>
Date: Fri, 6 Dec 2024 14:40:00 -0500
Subject: [PATCH] Add links to amrfinder output

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index ba0fa83..f5c221d 100644
--- a/README.md
+++ b/README.md
@@ -93,7 +93,7 @@ StxTyper is included with several Docker images including the [ncbi/amr](https:/
 
 - `--blast_bin <path>` Directory to search for tblastn binary. Overrides environment variable `$BLAST_BIN` and the default PATH.
 
-- `--amrfinder` Print the output in the fields that match AMRFinderPlus output. See below for details.
+- `--amrfinder` Print the output in the fields that match AMRFinderPlus output. [See below for details](#--amrfinder-output).
 
 - `--print_node` In the `--amrfinder` output format add the "Hierarchy node" as the last column. See the [field description in the AMRFinderPlus documentation](https://github.com/ncbi/amr/wiki/Running-AMRFinderPlus#fields) for details.