From fb5b160b923811ee48632fb8be37411b1f1352c4 Mon Sep 17 00:00:00 2001
From: John Sharples <john.sharples@bom.gov.au>
Date: Tue, 17 Oct 2023 10:15:36 +1100
Subject: [PATCH] 73: update .toml to enable pytest-cov report

---
 .github/workflows/python-app.yml | 10 ++++++----
 pyproject.toml                   | 12 ++++++++++++
 2 files changed, 18 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
index 3f0517bf0..d02955dd5 100644
--- a/.github/workflows/python-app.yml
+++ b/.github/workflows/python-app.yml
@@ -5,9 +5,9 @@ name: Unit Tests
 
 on:
   push:
-    branches: ["develop", "main"]
+    branches: ["develop", "main", "[0-9]+-*"]
   pull_request:
-    branches: ["develop", "main"]
+    branches: ["develop", "main", "[0-9]+-*"]
 
 permissions:
   contents: read
@@ -34,5 +34,7 @@ jobs:
     - name: Test with pytest
       run: |
         pip install pytest pytest-cov
-        pytest --cov-report html --cov=src --junitxml=junit/test-results.xml --junitxml=junit/test-results.xml
-        
+        coverage run -m pytest
+    - name: Report test coverage
+      run: |
+        coverage report -m
diff --git a/pyproject.toml b/pyproject.toml
index 661c2f4df..5fd2fe195 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -36,6 +36,7 @@ dev = [
     "mypy == 1.3.0",
     "pylint == 2.17.4",
     "dask",
+    "h5netcdf",
     "pandas-stubs"
 ]
 tutorial = [
@@ -78,3 +79,14 @@ warn_unused_configs = true
 
 [[tool.mypy.overrides]]
 ignore_missing_imports = true
+
+[tool.coverage.paths]
+source = ["/src/"]
+
+[tool.pytest.ini_options]
+addopts = [
+    '--cov-fail-under=98',
+    '--cov-report=html',
+    '--cov-report=term-missing',
+    '--junitxml=report.xml'
+]