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MBON DMAC

This is the central hub to facilitate data management and archiving workflows for the Integrated Sentinel Monitoring Network (ISMN) and Marine Biodiversity Observation Network (MBON) projects.

Target Users

This repository is intended for:

  • ISMN/MBON data providers: Researchers responsible for submitting data and metadata to the ISMN/MBON projects.
  • Data managers: Individuals tasked with managing data submissions and processing workflows within the projects.

Getting Started

  • Open a new issue
    • Use the "New Dataset" template
    • This template will guide you through the data submission process
  • Fill out required fields
  • Provide valid metadata
    • Ensure that metadata adheres to MBON standards. The MBON Metadata Form can help generate/validate your metadata during the submission process.

Example: "Gold Standard" Metadata

global:
  add:
    acknowledgment: Data collection was supported by multiple awards to NERACOOS,
      the University of New Hampshire and the University of Maine from
      various funding agencies, including NSF, NOAA and BOEM.
    contributor_email: [email protected]
    contributor_name: NERACOOS ISMN
    creator_country: USA
    creator_email: [email protected]
    creator_institution: School of Marine Sciences, University of Maine, Darling Marine Center
    creator_name: Jeffrey Runge, Ph.D
    creator_role: PI
    creator_sector: academic
    creator_type: person
    infoUrl: https://www.sentinelmonitoring.org/
    institution: University of Maine/NERACOOS
    keywords: Biodiversity, plankton, Gulf of Maine, time series, Calanus
    program: NERACOOS
    project: NERACOOS
    sourceUrl: local files
    subsetVariables: Station_ID, Mesh_Size
    summary: Coastal Maine Time Series Station (CMTS)
    time_coverage_end: '2023-08-12T00:11:00-05:00'
    time_coverage_start: '2020-08-12T00:11:00-05:00'
    title: Gulf of Maine CMTS Calanus Abundance Observations, since 2020
variables:
  CAST:
    add:
      destinationName: Cast
      ioos_category: Unknown
      long_name: Cast number for a given date
      standard_name: null
      units: null
  COMMENT:
    add:
      destinationName: COMMENT
      ioos_category: Unknown
      long_name: Comment
      standard_name: null
      units: null
  CRUISE_ID:
    add:
      destinationName: CRUISE_ID
      ioos_category: Identifier
      long_name: Cruise Identification Label
      standard_name: null
      units: null
  Calanus_finmarchicus_CI:
    add:
      destinationName: Calanus_finmarchicus_CI
      ioos_category: Unknown
      long_name: Calanus Finmarchicus stage CI
      standard_name: null
      units: Number of stage CI per m2
  Calanus_finmarchicus_CII:
    add:
      destinationName: Calanus_finmarchicus_CII
      ioos_category: Unknown
      long_name: Calanus Finmarchicus stage CII
      standard_name: null
      units: Number of stage CII per m2
  Calanus_finmarchicus_CIII:
    add:
      destinationName: Calanus_finmarchicus_CIII
      ioos_category: Unknown
      long_name: Calanus Finmarchicus stage CIII
      standard_name: null
      units: Number of stage CIII per m2
  Calanus_finmarchicus_CIV:
    add:
      destinationName: Calanus_finmarchicus_CIV
      ioos_category: Unknown
      long_name: Calanus Finmarchicus stage CIV
      standard_name: null
      units: Number of stage CIV per m2
  Calanus_finmarchicus_CV:
    add:
      destinationName: Calanus_finmarchicus_CV
      ioos_category: Unknown
      long_name: Calanus Finmarchicus stage CV
      standard_name: null
      units: Number of stage CV per m2
  Calanus_finmarchicus_F:
    add:
      destinationName: Calanus_finmarchicus_F
      ioos_category: Unknown
      long_name: Calanus Finmarchicus stage CVI Female
      standard_name: null
      units: Number of adult females per m2
  Calanus_finmarchicus_M:
    add:
      destinationName: Calanus_finmarchicus_M
      ioos_category: Unknown
      long_name: Calanus Finmarchicus stage CVI Male
      standard_name: null
      units: Number of adult males per m2
  Calanus_finmarchicus_N:
    add:
      destinationName: Calanus_finmarchicus_N
      ioos_category: Statistics
      long_name: Calanus Finmarchicus Nauplius stages
      standard_name: null
      units: Number of all nauplius stages per m2
  DW(G_M-2):
    add:
      destinationName: DW_G_M_2
      ioos_category: Unknown
      long_name: DW(G M-2)
      standard_name: null
      units: g/m2
  KEY:
    add:
      destinationName: Cruise_Identification_Tag
      ioos_category: Unknown
      long_name: Cruise Identification Tag
      standard_name: null
      units: null
  LAT_(DECIMAL):
    add:
      destinationName: latitude
      ioos_category: Location
      long_name: Latitude
      standard_name: latitude
      units: degrees_north
  LON_(DECIMAL):
    add:
      destinationName: longitude
      ioos_category: Location
      long_name: Longitude
      standard_name: longitude
      units: degrees_east
  MESH:
    add:
      destinationName: Mesh_Size
      ioos_category: Unknown
      long_name: Net mesh size
      standard_name: null
      units: microns
  NET_AREA:
    add:
      destinationName: Plankton_Net_Area
      ioos_category: Unknown
      long_name: Area of plankton net
      standard_name: null
      units: m2
  NET_DEPTH:
    add:
      destinationName: NET_DEPTH
      ioos_category: Location
      long_name: Maximum depth net deployed
      standard_name: null
      units: meters
  NET_ID:
    add:
      destinationName: Net_Type
      ioos_category: Unknown
      long_name: Net characteristics
      standard_name: null
      units: null
  SAMP_DW(G):
    add:
      destinationName: Sample_Dry_Weight
      ioos_category: Unknown
      long_name: Sample Dry Weight
      standard_name: null
      units: g
  SPLIT:
    add:
      destinationName: Sample_Split
      ioos_category: Unknown
      long_name: Sample split identifier
      standard_name: null
      units: null
  STATION:
    add:
      destinationName: Station_ID
      ioos_category: Identifier
      long_name: Station Identifier
      standard_name: null
      units: null
  STATION_DEPTH:
    add:
      destinationName: STATION_DEPTH
      ioos_category: Location
      long_name: Depth of station
      standard_name: null
      units: meters
  TOTAL_DILFACTOR_(CFIN):
    add:
      destinationName: TOTAL_DILFACTOR_CFIN
      ioos_category: Unknown
      long_name: TOTAL DILFACTOR (CFIN)
      standard_name: null
      units: g
  TOTAL_DILFACTOR_(OTHER):
    add:
      destinationName: Dilution_Factor
      ioos_category: Unknown
      long_name: Dilution factor
      standard_name: null
      units: g
  VOL_FILT:
    add:
      destinationName: Volume_Filtered
      ioos_category: Unknown
      long_name: Volume cleared by plankton net
      standard_name: null
      units: m3
  time:
    add:
      destinationName: time
      ioos_category: Time
      long_name: Time
      standard_name: time
      units: null

Additional Resources

Contact

Please open an issue and assign @Dylan-Pugh