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<!doctype html>
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<title>D-MAP EAC report on predictive neuroimaging 2022</title>
<meta name="description" content="D-MAP grant reports">
<meta name="author" content="Sergey M Plis">
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<section>
<p>
<h4>subproject 3</h4>
<h2 style="color: #000000">Predictive Neuroimaging</h2>
<div class="center">
<img style="bottom=0; width=100%; box-shadow: 0px 0px 0px
rgba(150, 150, 255,0.8);
border:0;"
width="80%"
src="figures/CREST_logo.png"
alt="IJCNN team">
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<div style="color: #000000">
presenter: Sergey Plis
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<img style="border:0; box-shadow: 0px 0px 0px;"
width="300"
src="figures/TReNDS_logo_light.png"
alt="logo">
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rgba(150, 150, 255, 0.8);"
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src="figures/neuroneural_logo.png"
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</section>
<section data-state="brightside">
<h2>Predictive Neuroimaging</h2>
<blockquote style="background-color: #eee8d5; width: 100%; font-size: 40px; text-align: left;" class="fragment" data-fragment-index="0">
Recognition, diagnosis, and estimation can all be thought of as special cases of prediction.
</blockquote>
<blockquote style="background-color: #eee8d5; width: 100%; font-size: 40px; text-align: center;" class="fragment" data-fragment-index="1">
We are interested in algorithms that learn to predict well
</blockquote>
</section>
<section>
<h2>New this year: undergraduates!</h2>
<ul style="list-style-type: none; padding: 0; margin: 0;">
<li style="background: url('figures/Armina.png') no-repeat left center; padding-left: 120px; background-size: 100px 100px; margin-bottom: 10px; padding-right: 100px;">Armina Fani</li>
<li style="background: url('figures/Thu.png') no-repeat left center; padding-left: 120px; background-size: 100px 100px; margin-bottom: 10px; padding-right: 100px;"> Isabelle Thu Le
<li style="background: url('figures/Mateo.png') no-repeat left center; padding-left: 120px; background-size: 100px 100px; margin-bottom: 10px; padding-right: 100px;"> Mateo Sanabria
<li style="background: url('figures/Mike.png') no-repeat left center; padding-left: 120px; background-size: 100px 100px; margin-bottom: 10px; padding-right: 100px;"> Mike Doan
</ul>
</section>
<section data-vertical-align-top data-background-size="contain" data-background="figures/posterdance.gif">
<h3 style="text-shadow: 4px 4px 4px #002b36; color: #cfcfcf">Poster Dance</h3>
</section>
<section data-vertical-align-top data-background-video="figures/brainchopV1.4.0.mp4" data-background-video-muted>
<h2 style="text-shadow: 4px 4px 4px #002b36; color: #93a1a1">Segmentation on the edge</h2>
</section>
<section data-vertical-align-top data-background="figures/GSURCwirehead.png" data-background-video-muted data-state="dimmed-slide">
<h2 class="fragment zoom-in" style="width: 120%; margin-left: -50px;">Robust segmentation: clinical and infants</h2>
<div class="fragment zoom-in" style="margin-top: -50px; margin-right: 10px;">
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px
rgba(150, 150, 255,
0.8);"
width="70%"
src="figures/brainchop_rough.gif"
alt="loop">
</div>
</section>
<section data-vertical-align-top data-background-size="cover" data-background="figures/distancesTable.svg" data-state="dimmed-slide">
<h2 class="fragment zoom-in" style="width: 120%; margin-left: -200px;">Surface reconstruction for the masses</h2>
<div id="header-right" style="margin-right: -100px; margin-top: -50px">
<img src="figures/William.png" alt="William Ashbee" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 1); margin-bottom: -5%" width="160px" >
<div style="font-size:10pt;">William Ashbee</div>
</div>
<row style="width: 150%; margin-left: -200px">
<col50>
<div class="fragment zoom-in" style="margin-top: 10px; margin-left: -10px; width: 80%">
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px
rgba(150, 150, 255,
0.8);"
width="120%"
src="figures/all_surface_types_hausdorff_chamfer_scatter.svg"
alt="loop">
<div style="font-size:14pt;color: #000000">Comparison against FreeSurfer</div>
</div>
</col50>
<col50>
<div class="fragment zoom-in" style="margin-top: 10px; margin-left: -10px; width: 80%">
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px
rgba(150, 150, 255,
0.8);"
width="120%"
src="figures/self_intersections_scatter.svg"
alt="loop">
<div style="font-size:14pt;color: #000000">Self Intersections</div>
</div>
</col50>
</row>
</section>
<section>
<h3>A Simple but tough to beat predictive model</h3>
<div id="header-left" style="margin-left: -100px; margin-top: -50px">
<img src="figures/Pavel.png" alt="Pavel Popov" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 1); margin-bottom: -5%" width="160px" >
<div style="font-size:10pt;">Pavel Popov</div>
</div>
<row style="margin-top: -20pt; width: 130%">
<col40>
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 0.8);"
width="100%"
src="figures/meanMLPmodel.svg"
alt="task">
</col40>
<col60 style="margin-top: -20pt; width: 130%">
<div class="fragment zoom-in" style="margin-top: 10px; margin-left: 50px; width: 80%">
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 0.8);"
width="100%"
src="figures/general_comparison_fin.svg"
alt="task">
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 0.8); margin-top: -25pt;"
width="100%"
src="figures/cross_comparison.svg"
alt="task">
</div>
</col60>
</row>
<div class="slide-footer" style="font-size:8pt;">
"A Simple but Tough-to-Beat Baseline for fMRI Time-series Classification"
</div>
</section>
<section data-vertical-align-top>
<h3>To Understand, Learn to Predict</h3>
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 0.8);"
width="100%" src="figures/learning_from_models.svg"
alt="Learning to predict">
<row style="margin-top:-30pt;">
<col50>
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 0.8);"
width="100%" src="figures/ica-components-subset.png"
alt="Learning to predict">
</col50>
<col50>
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 0.8);"
width="100%" src="figures/ICA_TC_example.svg"
alt="Learning to predict">
</col50>
</row>
<div class="slide-footer" style="font-size:9pt; margin-bottom:-20pt;">
<ol>
<li> Vellido, A. The importance of interpretability and visualization in machine learning for applications in medicine and health care. Neural computing applications 1–15 (2019).
<li> Singh, A., Sengupta, S. & Lakshminarayanan, V. Explainable deep learning models in medical image analysis. J. Imaging 6, 52 (2020).
<li> Samek, W., Montavon, G., Lapuschkin, S., Anders, C. J. & Müller, K.-R. Toward interpretable machine learning: Transparent deep neural networks and beyond. arXiv preprint arXiv:2003.07631 (2020).
</ol>
</div>
</section>
<section data-vertical-align-top>
<div id="header-right" style="margin-right: -150px; margin-top: -20px">
<img src="figures/Usman.png" alt="Usman Mahmood" style="border:0; box-shadow: 0px 0px 0px rgba(150, 150, 255, 1); margin-bottom: -5%" width="160px" >
<div style="font-size:10pt;">Usman Mahmood</div>
</div>
<h2>Interpretable Dynamic Neuroimaging</h2>
<div class="slide-footer" style="font-size:8pt;">
<ol>
<li> Mahmood U, Fu Z, Calhoun V, Plis S. Glacier: glass-box transformer for interpretable dynamic neuroimaging. InICASSP 2023-2023 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) 2023 Jun 4 (pp. 1-5). IEEE.
</ol>
</div>
<row style="width: 150%; margin-left: -200px">
<col40>
<div class="fragment zoom-in" style="margin-top: 10px; margin-left: -10px; width: 80%">
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px
rgba(150, 150, 255,
0.8);"
width="80%"
src="figures/glacier_arch.svg"
alt="loop">
<div style="font-size:14pt;color: #000000">Model Architecture</div>
</div>
</col40>
<col60>
<div class="fragment zoom-in" style="margin-top: 40px; margin-left: 10px; width: 80%">
<img class="stretch" style="border:0; box-shadow: 0px 0px 0px
rgba(150, 150, 255,
0.8);"
width="100%"
src="figures/task_specific_FNC.svg"
alt="loop">
<div style="font-size:14pt;color: #000000">Adaptive directed connectivity</div>
</div>
</col60>
</row>
</section>
<section data-background="figures/the_team23.svg" data-background-size="contain" data-vertical-align-top>
<h1 style="text-shadow: 4px 4px 4px #002b36; color: #cfcfcf">Questions?</h1>
</section>
</section>
</div>
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<h4>Subproject 3</h4>
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<h4>EAC 2024</h4>
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