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Implement circRNA database annotation functionalities #138

Closed
4 tasks done
nictru opened this issue Jun 9, 2024 · 1 comment · Fixed by #149
Closed
4 tasks done

Implement circRNA database annotation functionalities #138

nictru opened this issue Jun 9, 2024 · 1 comment · Fixed by #149
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feature-request Request for a new pipeline feature
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Before release pr...

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nictru commented Jun 9, 2024 •
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Description of feature

Some candidates:

Tasks
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  1. Implement circbase #139
    feature-request first-timers-only
  2. Implement circatlas #140
    feature-request first-timers-only
  3. Implement circbank #141
    feature-request first-timers-only
  4. Implement circRNADisease #142
    feature-request first-timers-only
@nictru nictru added the feature-request Request for a new pipeline feature label Jun 9, 2024
@nictru nictru self-assigned this Jun 9, 2024
@nictru nictru added this to the Before release process milestone Jun 9, 2024
@nictru nictru changed the title Implement circRNA database search functionalities Implement circRNA database annotation functionalities Jun 17, 2024
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nictru commented Jun 17, 2024

This can best be done by providing an additional input sample sheet with these columns:

  • Identifier
  • File (Bed File containing annotations)
  • Minimal overlap (optional)

@nictru nictru linked a pull request Jun 18, 2024 that will close this issue
Implement circrna database annotation functionalities #149
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feature-request Request for a new pipeline feature
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Implement circrna database annotation functionalities nf-core/circrna
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