Release Preparation Checklist

[apeltzer]

Description of the bug

There are a couple of things to address before a first release:

• Move all containers to be biocontainers
• Migrate the code to follow guidelines on nf-core:
  • Main.nf only calls a workflow - that can hold the logic to e.g. start several subworkflows
  • Subworkflows for combining multiple steps together, e.g. most people split preprocessing steps from QC and main analysis steps (a bit pipeline dependent how to do that)

Most of the above isn't difficult to do, but definitely has to be done before a first release. Also, I'd be inclined to get the open issues resolved as much as possible. if the conda issues persist, we can also ditch conda support - which is something we anyways try to encourage in people as its not exactly very reproducible compared to containers.

Command used and terminal output

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Relevant files

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System information

No response

[nictru]

I think all these tasks have been done. Can we close this issue?