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Nextflow is an excellent standardized pipeline tool and helps me a lot.
When I use the circrna, it always report error:
Execution cancelled -- Finishing pending tasks before exit
WARN: Got an interrupted exception while taking agent result | java.lang.InterruptedException
ERROR ~ Error executing process > 'NFCORE_CIRCRNA:CIRCRNA:PREPARE_GENOME:HISAT2_EXTRACTSPLICESITES'
Caused by:
Not a valid path value: 'null'
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
-- Check '.nextflow.log' file for details
ERROR ~ Unexpected error [ClosedByInterruptException]
-- Check '.nextflow.log' file for details
ERROR ~ Unexpected error [ClosedByInterruptException]
-- Check '.nextflow.log' file for details
It doesn't seem to have read the file yet. But when I change the code to run eccdna, it works well.
N E X T F L O W ~ version 23.10.0
Hardware: Desktop
Executor: local
Container engine: Docker
OS: Ubuntu 22.04
version of circrna: revision: 18e580e [master]
The text was updated successfully, but these errors were encountered:
Description of the bug
Nextflow is an excellent standardized pipeline tool and helps me a lot.
When I use the
circrna
, it always report error:It doesn't seem to have read the file yet. But when I change the code to run eccdna, it works well.
Could you please tell me why?
Command used and terminal output
$nextflow run nf-core/circrna --input samplesheet_1.csv --outdir '/media/super/Hard_Disk_1/USING/circdna/HCMV/HCMV/fastq/result' --genome GRCh38 -profile docker
Relevant files
.nextflow.log
System information
N E X T F L O W ~ version 23.10.0
Hardware: Desktop
Executor: local
Container engine: Docker
OS: Ubuntu 22.04
version of circrna: revision: 18e580e [master]
The text was updated successfully, but these errors were encountered: