computerome.config

//Profile config names for nf-core/configs
params {
    config_profile_description   = 'Computerome 2.0 cluster profile provided by nf-core/configs.'
    config_profile_contact       = 'Marc Trunjer Kusk Nielsen (@marcmtk)'
    config_profile_url           = 'https://www.computerome.dk/'
    project                      = null
    cache_dir                    = "/home/projects/${params.project}/scratch"
    schema_ignore_params         = "project,cache_dir,genomes,modules"
    validationSchemaIgnoreParams = "project,cache_dir,genomes,modules,schema_ignore_params"

    //Thin nodes with 192GB and Fat nodes with ~1500GB. Torque should be allowed to handle this
    max_memory                   = 1500.GB
    max_cpus                     = 40

    //There is no max walltime on the cluster, but a week seems sensible if not directly specified
    max_time                     = 168.h
}

singularity {
    enabled    = true
    autoMounts = true
    cacheDir   = params.cache_dir
}

process {
    resourceLimits = [
        memory: 1500.GB,
        cpus: 40,
        time: 168.h
    ]
    beforeScript   = "module load tools singularity/3.8.0; export _JAVA_OPTIONS=-Djava.io.tmpdir=${params.cache_dir}"
    executor       = 'pbs'
    queueSize      = 2000
    clusterOptions = "-A ${params.project} -W group_list=${params.project}"
}