Extra specific configuration for cutandrun pipeline
Specific-pipeline profiles exist for the following pipelines, and will be automatically loaded when supplying -profile unc_longleaf to your command:
- cutandrun
To use, run the pipeline with -profile unc_longleaf.
This will download and launch the eager specific unc_longleaf.config which is adapted to data generated at UNC-CH and processed on the Longleaf HPC.
Example: nextflow run nf-core/cutandrun -profile unc_longleaf
This custom config adds extra memory to the FRAG_LEN_HIST and DEEPTOOLS_PLOTHEATMAP_GENE_ALL as the jobs kept failing with default memory limits