diff --git a/conf/pipeline/viralrecon/genomes.config b/conf/pipeline/viralrecon/genomes.config index b60f1f1c..f194d561 100644 --- a/conf/pipeline/viralrecon/genomes.config +++ b/conf/pipeline/viralrecon/genomes.config @@ -15,20 +15,20 @@ params { // Please use 'MN908947.3' if possible because all primer sets are available / have been pre-prepared relative to that assembly fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.fna.gz' gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.gff.gz' - nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/nextclade_sars-cov-2_MN908947_2022-06-14T12_00_00Z.tar.gz' + nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/nextclade_sars-cov-2_MN908947_2024-10-17--16_48_48Z.tar.gz' nextclade_dataset_name = 'sars-cov-2' nextclade_dataset_reference = 'MN908947' - nextclade_dataset_tag = '2022-06-14T12:00:00Z' + nextclade_dataset_tag = '2024-10-17--16-48-48Z' } // SARS-CoV-2 'MN908947.3' { fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.fna.gz' gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz' - nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/nextclade_sars-cov-2_MN908947_2022-06-14T12_00_00Z.tar.gz' + nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/nextclade_sars-cov-2_MN908947_2024-10-17--16_48_48Z.tar.gz' nextclade_dataset_name = 'sars-cov-2' nextclade_dataset_reference = 'MN908947' - nextclade_dataset_tag = '2022-06-14T12:00:00Z' + nextclade_dataset_tag = '2024-10-17--16-48-48Z' primer_sets { artic { '1' { @@ -103,10 +103,10 @@ params { 'NC_063383.1' { fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/GCF_014621545.1_ASM1462154v1_genomic.220824.fna.gz' gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/GCF_014621545.1_ASM1462154v1_genomic.220824.gff.gz' - nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/nextclade_hMPXV_NC_063383.1_2022-08-19T12_00_00Z.tar.gz' + nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/nextclade_hMPXV_NC_063383.1_2024-08-27--21-28-04Z.tar.gz' nextclade_dataset_name = 'hMPXV' nextclade_dataset_reference = 'NC_063383.1' - nextclade_dataset_tag = '2022-08-19T12:00:00Z' + nextclade_dataset_tag = '2024-08-27--21-28-04Z' } // Monkeypox