From 745e77a6865c8518f91822618f6f5bc2b0bdb473 Mon Sep 17 00:00:00 2001 From: Gregor Sturm Date: Mon, 7 Oct 2024 12:01:36 +0000 Subject: [PATCH] Fix changelog and snap files --- CHANGELOG.md | 8 ++++---- tests/pipeline/bases2fastq.nf.test.snap | 2 +- tests/pipeline/bcl2fastq.nf.test.snap | 2 +- tests/pipeline/bclconvert.nf.test.snap | 4 ++-- tests/pipeline/bclconvert_mini.nf.test.snap | 4 ++-- tests/pipeline/fqtk.nf.test.snap | 2 +- tests/pipeline/kraken.nf.test.snap | 8 ++++---- tests/pipeline/mkfastq.nf.test.snap | 2 +- tests/pipeline/sgdemux.nf.test.snap | 2 +- tests/pipeline/skip_tools.nf.test.snap | 10 +++++----- tests/pipeline/test_pe.nf.test.snap | 2 +- 11 files changed, 23 insertions(+), 23 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index d81a18db..537a33f5 100755 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,18 +3,18 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## 1.5.2dev (UNRELEASED) +## 1.5.2 - 2024-10-07 ### `Changed` -- [#253](https://github.com/nf-core/demultiplex/pull/256) Updated all modules and subworkflows, and added new bclconvert test profile. +- [#263](https://github.com/nf-core/demultiplex/pull/263) Updated all modules and subworkflows, and added new bclconvert test profile. -## 1.5.1 +## 1.5.1 - 2024-08-20 ### `Fixed` - [#253](https://github.com/nf-core/demultiplex/pull/253) Fixed mkfastq output channels. -- [#264](https://github.com/nf-core/demultiplex/pull/264) Fixed adapter removal for input samplesheets without lane information. +- [#265](https://github.com/nf-core/demultiplex/pull/265) Fixed adapter removal for input samplesheets without lane information. ## 1.5.0 - 2024-08-12 diff --git a/tests/pipeline/bases2fastq.nf.test.snap b/tests/pipeline/bases2fastq.nf.test.snap index 7b2399a1..fe10d197 100644 --- a/tests/pipeline/bases2fastq.nf.test.snap +++ b/tests/pipeline/bases2fastq.nf.test.snap @@ -1,7 +1,7 @@ { "software_versions": { "content": [ - "{BASES2FASTQ={bases2fastq=1.8.0.1260801529, use subject to license available at elementbiosciences.com}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BASES2FASTQ={bases2fastq=1.8.0.1260801529, use subject to license available at elementbiosciences.com}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", diff --git a/tests/pipeline/bcl2fastq.nf.test.snap b/tests/pipeline/bcl2fastq.nf.test.snap index ff91e6d9..f819eb72 100644 --- a/tests/pipeline/bcl2fastq.nf.test.snap +++ b/tests/pipeline/bcl2fastq.nf.test.snap @@ -1,7 +1,7 @@ { "software_versions": { "content": [ - "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", diff --git a/tests/pipeline/bclconvert.nf.test.snap b/tests/pipeline/bclconvert.nf.test.snap index db48652e..570ef214 100644 --- a/tests/pipeline/bclconvert.nf.test.snap +++ b/tests/pipeline/bclconvert.nf.test.snap @@ -28,7 +28,7 @@ }, "software_versions": { "content": [ - "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.8.4", @@ -48,4 +48,4 @@ }, "timestamp": "2024-10-02T20:50:32.184940324" } -} \ No newline at end of file +} diff --git a/tests/pipeline/bclconvert_mini.nf.test.snap b/tests/pipeline/bclconvert_mini.nf.test.snap index 3610aa10..f837a605 100644 --- a/tests/pipeline/bclconvert_mini.nf.test.snap +++ b/tests/pipeline/bclconvert_mini.nf.test.snap @@ -60,7 +60,7 @@ }, "software_versions": { "content": [ - "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.8.4", @@ -80,4 +80,4 @@ }, "timestamp": "2024-10-03T12:19:24.749587693" } -} \ No newline at end of file +} diff --git a/tests/pipeline/fqtk.nf.test.snap b/tests/pipeline/fqtk.nf.test.snap index 5eace673..005b38ff 100644 --- a/tests/pipeline/fqtk.nf.test.snap +++ b/tests/pipeline/fqtk.nf.test.snap @@ -11,7 +11,7 @@ }, "software_versions": { "content": [ - "{CSV2TSV={sed=4.8}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{CSV2TSV={sed=4.8}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", diff --git a/tests/pipeline/kraken.nf.test.snap b/tests/pipeline/kraken.nf.test.snap index 7422a882..45263a04 100644 --- a/tests/pipeline/kraken.nf.test.snap +++ b/tests/pipeline/kraken.nf.test.snap @@ -15,7 +15,7 @@ "laneBarcode.html:md5,2bbdae3ee57151eab520c966597d7438" ], [ - + ] ] ], @@ -36,7 +36,7 @@ "laneBarcode.html:md5,48842c23b9a2816aec540177df870968" ], [ - + ] ] ] @@ -63,7 +63,7 @@ }, "software_versions": { "content": [ - "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, KRAKEN2={kraken2=2.1.3, pigz=2.8}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, KRAKEN2={kraken2=2.1.3, pigz=2.8}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", @@ -84,4 +84,4 @@ }, "timestamp": "2024-10-02T20:52:55.269657852" } -} \ No newline at end of file +} diff --git a/tests/pipeline/mkfastq.nf.test.snap b/tests/pipeline/mkfastq.nf.test.snap index 0bbbb99e..7e6d7669 100644 --- a/tests/pipeline/mkfastq.nf.test.snap +++ b/tests/pipeline/mkfastq.nf.test.snap @@ -1,7 +1,7 @@ { "software_versions": { "content": [ - "{CELLRANGER_MKFASTQ={cellranger=8.0.0}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{CELLRANGER_MKFASTQ={cellranger=8.0.0}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", diff --git a/tests/pipeline/sgdemux.nf.test.snap b/tests/pipeline/sgdemux.nf.test.snap index 28ee07a3..a9bda541 100644 --- a/tests/pipeline/sgdemux.nf.test.snap +++ b/tests/pipeline/sgdemux.nf.test.snap @@ -1,7 +1,7 @@ { "software_versions": { "content": [ - "{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, SGDEMUX={sgdemux=1.1.1}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, SGDEMUX={sgdemux=1.1.1}, UNTAR_FLOWCELL={untar=1.34}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", diff --git a/tests/pipeline/skip_tools.nf.test.snap b/tests/pipeline/skip_tools.nf.test.snap index 40aa06d2..c30d5dac 100644 --- a/tests/pipeline/skip_tools.nf.test.snap +++ b/tests/pipeline/skip_tools.nf.test.snap @@ -1,7 +1,7 @@ { "software_versions_skip_trimming": { "content": [ - "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", @@ -115,7 +115,7 @@ }, "software_versions_skip_fastqc": { "content": [ - "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", @@ -125,7 +125,7 @@ }, "software_versions_skip_fastp_fastqc": { "content": [ - "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", @@ -135,7 +135,7 @@ }, "software_versions_skip_multiqc": { "content": [ - "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", @@ -145,7 +145,7 @@ }, "software_versions_skip_fastp": { "content": [ - "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCLCONVERT={bclconvert=4.3.6}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0", diff --git a/tests/pipeline/test_pe.nf.test.snap b/tests/pipeline/test_pe.nf.test.snap index 57e1e62a..d93f5470 100644 --- a/tests/pipeline/test_pe.nf.test.snap +++ b/tests/pipeline/test_pe.nf.test.snap @@ -66,7 +66,7 @@ }, "software_versions": { "content": [ - "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.1}}" + "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.2}}" ], "meta": { "nf-test": "0.9.0",