MultiQC report is empty

[Aratz]

Description of the bug

There is a suspicious line that was introduced in PR #132 and probably went unnoticed during the review: https://github.com/nf-core/demultiplex/pull/132/files#diff-ff6ba1d000a057ac7a4c87cc84b06ceefd845622f7b7d6fb5aafbd53f54bcf05R230

This resets one of MultiQC's input channels and essentially removes all the files from that channel. In other words, this removes all the plots from the MultiQC report.

Commenting out that line seems to solve the problem.

Does anyone know why this line was added in the first place?

Command used and terminal output

$ nextflow run demultiplex/main.nf -profile test,docker --outdir outdir
N E X T F L O W  ~  version 23.04.3
Launching `demultiplex/main.nf` [evil_goodall] DSL2 - revision: a8c81121bd


------------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~'
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/demultiplex v1.4.0dev
------------------------------------------------------
Core Nextflow options
  runName                   : evil_goodall
  containerEngine           : docker
  launchDir                 : /home/adrien/Documents/nf-core
  workDir                   : /home/adrien/Documents/nf-core/work
  projectDir                : /home/adrien/Documents/nf-core/demultiplex
  userName                  : adrien
  profile                   : test,docker
  configFiles               : 

Workflow options
  skip_tools                : []

Input/output options
  input                     : https://raw.githubusercontent.com/nf-core/test-datasets/demultiplex/samplesheet/1.3.0/flowcell_input.csv
  outdir                    : outdir

Demultiplexing options
  demultiplexer             : bclconvert

Institutional config options
  config_profile_name       : Test profile
  config_profile_description: Minimal test dataset to check pipeline function

Max job request options
  max_cpus                  : 2
  max_memory                : 6.GB
  max_time                  : 6.h

!! Only displaying parameters that differ from the pipeline defaults !!
------------------------------------------------------
If you use nf-core/demultiplex for your analysis please cite:

* The pipeline
  https://doi.org/10.5281/zenodo.7153103

* The nf-core framework
  https://doi.org/10.1038/s41587-020-0439-x

* Software dependencies
  https://github.com/nf-core/demultiplex/blob/master/CITATIONS.md

[-        ] process > NFCORE_DEMULTIPLEX:DEMULTIPLEX:BCL_DEMULTIPLEX:BCLCO... -
executor >  local (1)
executor >  local (2)
executor >  local (6)
[72/7afcb9] process > NFCORE_DEMULTIPLEX:DEMULTIPLEX:BCL_DEMULTIPLEX:BCLCO... [100%] 1 of 1 ✔
[11/25a554] process > NFCORE_DEMULTIPLEX:DEMULTIPLEX:FASTP (Sample1_S1_L001)  [100%] 1 of 1 ✔
[9c/1f48c2] process > NFCORE_DEMULTIPLEX:DEMULTIPLEX:FALCO (Sample1_S1_L001)  [100%] 1 of 1 ✔
[6d/f5bc30] process > NFCORE_DEMULTIPLEX:DEMULTIPLEX:MD5SUM (Sample1_S1_L001) [100%] 1 of 1 ✔
[28/a5015a] process > NFCORE_DEMULTIPLEX:DEMULTIPLEX:CUSTOM_DUMPSOFTWAREVE... [100%] 1 of 1 ✔
[9f/bfbd21] process > NFCORE_DEMULTIPLEX:DEMULTIPLEX:MULTIQC                  [100%] 1 of 1 ✔
-[nf-core/demultiplex] Pipeline completed successfully-
Completed at: 16-Oct-2023 15:53:44
Duration    : 1m 6s
CPU hours   : (a few seconds)
Succeeded   : 6

Relevant files

multiqc.zip

System information

No response

[Aratz]

Ah, apparently this may have been already reported in #64.

[edmundmiller]

Duplicate #64