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Important! Template update for nf-core/tools v2.12 #167

Merged
merged 8 commits into from
Feb 5, 2024
Merged

Important! Template update for nf-core/tools v2.12 #167

merged 8 commits into from
Feb 5, 2024

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Version 2.12 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.12 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.12 release page.

@nf-core-bot nf-core-bot requested a review from a team as a code owner January 29, 2024 15:54
@nf-core-bot nf-core-bot requested review from glichtenstein and removed request for a team January 29, 2024 15:54
@Aratz Aratz self-assigned this Feb 2, 2024
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github-actions bot commented Feb 2, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 0627d6e

+| ✅ 168 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗   4 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in README.md: Describe the minimum required steps to execute the pipeline, e.g. how to prepare samplesheets.
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in WorkflowDemultiplex.groovy: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.12.1
  • Run at 2024-02-02 12:54:36

@Aratz Aratz merged commit bdd466c into dev Feb 5, 2024
5 checks passed
@Aratz Aratz mentioned this pull request Feb 27, 2024
Merged
@apeltzer apeltzer deleted the nf-core-template-merge-2.12 branch August 12, 2024 21:02
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@Aratz Aratz Aratz left review comments

@matthdsm matthdsm matthdsm approved these changes

@glichtenstein glichtenstein Awaiting requested review from glichtenstein glichtenstein is a code owner automatically assigned from nf-core/demultiplex

@nh13 nh13 Awaiting requested review from nh13 nh13 is a code owner

@sam-white04 sam-white04 Awaiting requested review from sam-white04 sam-white04 is a code owner

@blajoie blajoie Awaiting requested review from blajoie blajoie is a code owner

@maxulysse maxulysse Awaiting requested review from maxulysse

@edmundmiller edmundmiller Awaiting requested review from edmundmiller

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