diff --git a/nextflow_schema.json b/nextflow_schema.json index 679f7d04..8558c86e 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -104,6 +104,21 @@ } } }, + "downstream_csv_options": { + "title": "Downstream CSV options", + "type": "object", + "description": "Options to customize downstream csv creation", + "default": "", + "properties": { + "strandedness": { + "type": "string", + "enum": ["unstranded", "auto", "reverse", "forward"], + "default": "auto", + "description": "Specifies the strandedness of RNA-Seq data for downstream sample sheet generation. This parameter does not affect the demultiplexing process but is used to generate the appropriate field in the nf-core/rnaseq samplesheet", + "fa_icon": "fas fa-arrows-alt-v" + } + } + }, "institutional_config_options": { "title": "Institutional config options", "type": "object", @@ -273,6 +288,9 @@ { "$ref": "#/$defs/demultiplex_options" }, + { + "$ref": "#/$defs/downstream_csv_options" + }, { "$ref": "#/$defs/institutional_config_options" }, @@ -282,11 +300,5 @@ { "$ref": "#/$defs/generic_options" } - ], - "properties": { - "strandedness": { - "type": "string", - "default": "auto" - } - } + ] }