From b44d4a5ce7552473736088c576cc9190609ae34c Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Thu, 2 Mar 2023 11:37:00 +0000 Subject: [PATCH 1/2] Set version for release --- CHANGELOG.md | 4 +--- nextflow.config | 2 +- 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e733cf95..ebc6d87a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,9 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v1.1.1dev - xxxx-xx-xx - -### `Added` +## v1.1.1 - 2023-03-02 ### `Fixed` diff --git a/nextflow.config b/nextflow.config index 09a8df96..8afb243a 100644 --- a/nextflow.config +++ b/nextflow.config @@ -313,7 +313,7 @@ manifest { description = 'Differential abundance analysis' mainScript = 'main.nf' nextflowVersion = '!>=22.10.1' - version = '1.1.1dev' + version = '1.1.1' doi = '10.5281/zenodo.7568000' } From 019f345812cc918e121d81e05289b09028a10009 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Thu, 2 Mar 2023 11:42:23 +0000 Subject: [PATCH 2/2] Trivial change for CI --- CHANGELOG.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index ebc6d87a..dd113edc 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -19,13 +19,13 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Fixed` -- [[#55](https://github.com/nf-core/differentialabundance/pull/55)] - Don't drop dimensions in report with single informative variable ([@pinin4fjords](https://github.com/pinin4fjords), reviewed by [@mashehu](https://github.com/mashehu)) +- [[#55](https://github.com/nf-core/differentialabundance/pull/55)] - Don't drop dimensions in report with single informative variable ([@pinin4fjords](https://github.com/pinin4fjords), review by [@mashehu](https://github.com/mashehu)) - [[#57](https://github.com/nf-core/differentialabundance/issues/57)] - Update module shinyngs/validatefomcomponents and bump other shinyngs modules to resolve [[#56](https://github.com/nf-core/differentialabundance/issues/56)] ([@WackerO](https://github.com/WackerO), review by [@pinin4fjords](https://github.com/pinin4fjords)) -- [[#65](https://github.com/nf-core/differentialabundance/pull/65)] - Update shinyngs modules to latest to resolve palette issues reported by [@Shellfishgene](https://github.com/Shellfishgene) ([@pinin4fjords](https://github.com/pinin4fjords), reviewed by [@mashehu](https://github.com/mashehu)) +- [[#65](https://github.com/nf-core/differentialabundance/pull/65)] - Update shinyngs modules to latest to resolve palette issues reported by [@Shellfishgene](https://github.com/Shellfishgene) ([@pinin4fjords](https://github.com/pinin4fjords), review by [@mashehu](https://github.com/mashehu)) - [[#67](https://github.com/nf-core/differentialabundance/issues/67)] - Error when contrast is blocking by multiple variables ([@pinin4fjords](https://github.com/pinin4fjords), reported by [@clstacy](https://github.com/clstacy), review by [@jfy133](https://github.com/jfy133)) - [[#71](https://github.com/nf-core/differentialabundance/pull/71)] - Add palette options, bring full check.names fixes from upstream, closing [[#68](https://github.com/nf-core/differentialabundance/issues/68)] reported by [@Shellfishgene](https://github.com/Shellfishgene), [[#69](https://github.com/nf-core/differentialabundance/issues/69)] reported by [@clstacy](https://github.com/clstacy). ([@pinin4fjords](https://github.com/pinin4fjords), reported by [@clstacy](https://github.com/clstacy), review by [@matthdsm](https://github.com/matthdsm), [@WackerO](https://github.com/WackerO)) - [[#73](https://github.com/nf-core/differentialabundance/pull/73)] - Make `--matrix`, `--input`, `--features` accept either CSV,TXT or TSV files as input ([@apeltzer](https://github.com/apeltzer), review by [@pinin4fjords](https://github.com/pinin4fjords)) -- [[#75](https://github.com/nf-core/differentialabundance/pull/75)] - Bump deseq2/differential for check.names fix ([@pinin4fjords](https://github.com/pinin4fjords), reviewed by [@apeltzer](https://github.com/apeltzer)) +- [[#75](https://github.com/nf-core/differentialabundance/pull/75)] - Bump deseq2/differential for check.names fix ([@pinin4fjords](https://github.com/pinin4fjords), review by [@apeltzer](https://github.com/apeltzer)) - [[#76](https://github.com/nf-core/differentialabundance/pull/76)] - Fix up non-gtf operation using matrix as annotation source ([@pinin4fjords](https://github.com/pinin4fjords), reported by [@apeltzer](https://github.com/apeltzer), review by [@apeltzer](https://github.com/apeltzer)) - [[#82](https://github.com/nf-core/differentialabundance/pull/82)] - Address v1.1.0 pre-release feedback (subway map fixes) ([@pinin4fjords](https://github.com/pinin4fjords), reported by [@mashehu](https://github.com/mashehu))