diff --git a/subworkflows/local/differential/main.nf b/subworkflows/local/differential/main.nf index 4c913761..c06d1d0a 100644 --- a/subworkflows/local/differential/main.nf +++ b/subworkflows/local/differential/main.nf @@ -94,7 +94,7 @@ workflow DIFFERENTIAL { pathway: [ meta, pathway ] } .set { ch_deseq2 } - + // do we need this process DESEQ2_NORM? DESEQ2_NORM ( ch_deseq2.contrast.first(), @@ -102,7 +102,7 @@ workflow DIFFERENTIAL { ch_deseq2.control_features, ch_deseq2.transcript_lengths ) - + DESEQ2_DIFFERENTIAL ( ch_deseq2.contrast, ch_deseq2.samplesheet, @@ -133,7 +133,7 @@ workflow DIFFERENTIAL { ch_logfc_deseq2, ch_padj_deseq2 ) - + ch_results_genewise = DESEQ2_DIFFERENTIAL.out.results .join(ch_deseq2.pathway).map(correct_meta_data).mix(ch_results_genewise)