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better handling of ext.args vs toolsheet args #313

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suzannejin opened this issue Oct 23, 2024 · 0 comments
Open
1 task

better handling of ext.args vs toolsheet args #313

suzannejin opened this issue Oct 23, 2024 · 0 comments

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@suzannejin
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suzannejin commented Oct 23, 2024

  • handle the toolsheet arguments + ext.args in a way that the repeated arguments would be overwritten considering the hierarchy of the params: toolsheet > command line > config args > nextflow.config

See discussion in #302

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