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Create a subworkflow for functional analysis methods #384

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3 of 4 tasks
Tracked by #385
suzannejin opened this issue Dec 10, 2024 · 1 comment
Open
3 of 4 tasks
Tracked by #385

Create a subworkflow for functional analysis methods #384

suzannejin opened this issue Dec 10, 2024 · 1 comment
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enhancement New feature or request

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@suzannejin
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suzannejin commented Dec 10, 2024

Tasks

Some work is done in branch dev-ratio, now following the effort in #341, we want to:

  • Clean the code for such subworkflow (it calls functional analysis methods like GSEA and gProfiler2)
  • Add tests
  • Add it to nf-core/modules as component

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@suzannejin suzannejin converted this from a draft issue Dec 10, 2024
@suzannejin suzannejin added the enhancement New feature or request label Dec 10, 2024
@suzannejin suzannejin moved this from ToDo - high priority to ToDO - subworkflows and multi-tool in differentialabundance Dec 10, 2024
@suzannejin suzannejin moved this from ToDO - subworkflows and multi-tool to In progress in differentialabundance Dec 11, 2024
@suzannejin suzannejin self-assigned this Dec 11, 2024
@suzannejin
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Ongoing work in nf-core/modules#7254

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Labels
enhancement New feature or request
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