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Ensemble archive GRCh38 is out of date (apr2018) #208
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Hi @tlitfin, thanks for reporting! Yes, this is an annoying issue and we are currently working on the possibility to provide the Ensembl (BioMart) version via parameter. Not sure how they decide when to retire an archive since the |
Maybe dependent on this issue: tests for grch38 run into
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I ran the example and have to change to the GRCh38 from http://jul2023.archive.ensembl.org. I got several errors when trying to get data from GRCh37 with https://feb2014.archive.ensembl.org.
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Hi @chagas98, thanks for reporting. Would you need the February 2014 archive specifically? If so, please create a separate issue and provide the corresponding error messages. I am not sure if we can still support this version but we can have a look if you specifically need this one. |
No need. Just reporting. I think the GRCh37 version has been hosted by https://grch37.ensembl.org/index.html. As I only testing some stuff from the pipeline, I did not dive into it. Thanks @christopher-mohr ! |
Fixed / workaround in #213. |
Description of the bug
It seems that Ensembl archives are maintained for 5 years which means that the apr2018 version for GRCh38 is no longer available.
Command used and terminal output
Relevant files
No response
System information
No response
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