From 4eb2c94ceefc8cc98118200bad3267acd6777ce3 Mon Sep 17 00:00:00 2001 From: maxulysse Date: Mon, 14 Oct 2024 15:32:19 +0200 Subject: [PATCH] Fix linting --- .github/PULL_REQUEST_TEMPLATE.md | 2 +- .nf-core.yml | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 1a12c495..b3dc5bab 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -18,7 +18,7 @@ Learn more about contributing: [CONTRIBUTING.md](https://github.com/nf-core/fetc - [ ] If you've added a new tool - have you followed the pipeline conventions in the [contribution docs](https://github.com/nf-core/fetchngs/tree/master/.github/CONTRIBUTING.md) - [ ] If necessary, also make a PR on the nf-core/fetchngs _branch_ on the [nf-core/test-datasets](https://github.com/nf-core/test-datasets) repository. - [ ] Make sure your code lints (`nf-core pipelines lint`). -- [ ] Ensure the test suite passes (`nextflow run . -profile test,docker --outdir `). +- [ ] Ensure the test suite passes (`nf-test test --verbose --debug --profile "+docker" tests/`). - [ ] Check for unexpected warnings in debug mode (`nextflow run . -profile debug,test,docker --outdir `). - [ ] Usage Documentation in `docs/usage.md` is updated. - [ ] Output Documentation in `docs/output.md` is updated. diff --git a/.nf-core.yml b/.nf-core.yml index bfa8bcc0..0a79964c 100644 --- a/.nf-core.yml +++ b/.nf-core.yml @@ -9,6 +9,7 @@ lint: - conf/igenomes_ignored.config - conf/modules.config files_unchanged: + - .github/PULL_REQUEST_TEMPLATE.md - assets/sendmail_template.txt modules_config: False multiqc_config: False